Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 48 curated entries in PaperBLAST's database that match '2.1.3.3' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS03010: ornithine carbamoyltransferase
is similar to:
PaperBLAST

OTC2_ECOLI / P06960: Ornithine carbamoyltransferase subunit F; OTCase-2; EC 2.1.3.3 from Escherichia coli
ArgF / b0273: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli
argF / P06960: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli

90% id,
100% cov

OTC1_ECOLI / P04391: Ornithine carbamoyltransferase subunit I; OTCase-1; EC 2.1.3.3 from Escherichia coli
ArgI / b4254: ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli
argI / GB|AAA23483.1: ornithine carbamoyltransferase, subunit I; EC 2.1.3.3 from Escherichia coli
argI / P04391: ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli

90% id,
100% cov

OTCC_PSEAE / P08308: Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 from Pseudomonas aeruginosa

59% id,
98% cov

More...

BWI76_RS02995: aspartate carbamoyltransferase
is similar to:
PaperBLAST

argF / P18186: ArgF (EC 2.1.3.3) from Bacillus subtilis

35% id,
95% cov

OTCC_HALSA / Q48296: Ornithine carbamoyltransferase, catabolic; cOTCase; EC 2.1.3.3 from Halobacterium salinarum
arcB / Q48296: ArcB (EC 2.1.3.3) from Halobacterium salinarum
Q48296: ornithine carbamoyltransferase (EC 2.1.3.3) from Halobacterium salinarum

31% id,
100% cov

Q98BB6: ornithine carbamoyltransferase (EC 2.1.3.3) from Mesorhizobium loti

31% id,
99% cov

More...

BWI76_RS17500: knotted carbamoyltransferase YgeW
is similar to:
PaperBLAST

OTC2_ECOLI / P06960: Ornithine carbamoyltransferase subunit F; OTCase-2; EC 2.1.3.3 from Escherichia coli
ArgF / b0273: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli
argF / P06960: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli

26% id,
99% cov

OTCC_PSEAE / P08308: Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 from Pseudomonas aeruginosa

26% id,
98% cov

OTC_MYCBO / P0A5M9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium bovis
OTC_MYCTU / P9WIT9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium tuberculosis
P0A5M9: ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis
P9WIT9: ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis

26% id,
97% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory