Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 35 curated entries in PaperBLAST's database that match '2.3.3.9' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS01660: malate synthase A
is similar to:
PaperBLAST

Mas / b4014: malate synthase A (EC 2.3.3.9) from Escherichia coli
aceB / P08997: malate synthase A (EC 2.3.3.9) from Escherichia coli

90% id,
100% cov

SO1483: Malate synthase (EC 2.3.3.9) from Shewanella oneidensis

67% id,
97% cov

Q5YLB8: malate synthase (EC 2.3.3.9) from Paracoccidioides brasiliensis

49% id,
97% cov

More...

BWI76_RS04445: citrate (pro-3S)-lyase subunit beta
is similar to:
PaperBLAST

CLYBL_MOUSE / Q8R4N0: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein, mitochondrial; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Mus musculus

29% id,
87% cov

CLYBL_HUMAN / Q8N0X4: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Homo sapiens
CLYBL / Q8N0X4: malate/β-methylmalate synthase (EC 2.3.3.9) from Homo sapiens

27% id,
86% cov

BWI76_RS01665: isocitrate lyase
is similar to:
PaperBLAST

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

56% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

917595-918548 (frame +3) on NZ_CP020657
is similar to:
PaperBLAST

CLYBL_HUMAN / Q8N0X4: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Homo sapiens
CLYBL / Q8N0X4: malate/β-methylmalate synthase (EC 2.3.3.9) from Homo sapiens
Also see hits to annotated proteins above

27% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory