Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 36 curated entries in PaperBLAST's database that match '2.6.1.83' as complete word(s).

These curated entries have 23 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS20495: alanine transaminase
is similar to:
PaperBLAST

DAPAT_MOOTA / Q2RK33: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Moorella thermoacetica
Q2RK33: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Moorella thermoacetica

42% id,
97% cov

Q8TQ40: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanosarcina acetivorans

42% id,
97% cov

DAPAT_SYNFM / A0LEA5: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Syntrophobacter fumaroxidans
A0LEA5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Syntrophobacter fumaroxidans

41% id,
98% cov

More...

BWI76_RS10245: aspartate aminotransferase
is similar to:
PaperBLAST

DAPAT_GLOVI / Q7NDX4: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Gloeobacter violaceus
Q7NDX4: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Gloeobacter violaceus

30% id,
98% cov

Q3MDN5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Trichormus variabilis

28% id,
98% cov

DAPAT_MOOTA / Q2RK33: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Moorella thermoacetica
Q2RK33: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Moorella thermoacetica

27% id,
97% cov

More...

BWI76_RS20205: aminotransferase AlaT
is similar to:
PaperBLAST

DAPAT_MOOTA / Q2RK33: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Moorella thermoacetica
Q2RK33: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Moorella thermoacetica

27% id,
95% cov

DAPAT_CHLTR / O84395: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Chlamydia trachomatis
O84395: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Chlamydia trachomatis

26% id,
91% cov

Q3MDN5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Trichormus variabilis

21% id,
98% cov

More...

BWI76_RS07920: methionine aminotransferase
is similar to:
PaperBLAST

O66630: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Aquifex aeolicus

25% id,
98% cov

DAPAT_CHLTR / O84395: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Chlamydia trachomatis
O84395: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Chlamydia trachomatis

26% id,
90% cov

DAPAT_SYNFM / A0LEA5: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Syntrophobacter fumaroxidans
A0LEA5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Syntrophobacter fumaroxidans

24% id,
99% cov

More...

BWI76_RS16300: bifunctional beta-cystathionase/maltose regulon regulatory protein
is similar to:
PaperBLAST

DAPAT_GLOVI / Q7NDX4: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Gloeobacter violaceus
Q7NDX4: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Gloeobacter violaceus

25% id,
91% cov

Q8TQ40: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanosarcina acetivorans

23% id,
91% cov

BWI76_RS23210: threonine-phosphate decarboxylase
is similar to:
PaperBLAST

DAPAT_CHLTR / O84395: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Chlamydia trachomatis
O84395: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Chlamydia trachomatis

21% id,
89% cov

A8IW39: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Chlamydomonas reinhardtii

24% id,
80% cov

A0A6P3CW87: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Verrucomicrobium spinosum

23% id,
80% cov

More...

BWI76_RS18930: histidinol-phosphate transaminase
is similar to:
PaperBLAST

Q9ZQI7: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Arabidopsis thaliana

26% id,
29% cov

DAPAT_PARUW / Q6MDE0: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Protochlamydia amoebophila
Q6MDE0: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Candidatus Protochlamydia

27% id,
23% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4834509-4835645 (frame -3) on NZ_CP020657
is similar to:
PaperBLAST

A8IW39: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Chlamydomonas reinhardtii
Also see hits to annotated proteins above

23% id,
90% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory