Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 20 curated entries in PaperBLAST's database that match '3.5.3.11'.

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS24025: agmatinase
is similar to:
PaperBLAST

SPEB_ECOLI / P60651: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Escherichia coli
SpeB / b2937: agmatinase (EC 3.5.3.11) from Escherichia coli
speB / RF|NP_417412: agmatinase; EC 3.5.3.11 from Escherichia coli
speB / P60651: agmatinase (EC 3.5.3.11) from Escherichia coli

99% id,
100% cov

SPEB_PROMI / Q7X3P1: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Proteus mirabilis

82% id,
99% cov

speB / P70999: agmatinase (EC 3.5.3.11) from Bacillus subtilis

36% id,
93% cov

More...

BWI76_RS21880: agmatinase
is similar to:
PaperBLAST

A0A146AXJ2: agmatinase (EC 3.5.3.11) from Apostichopus japonicus

63% id,
88% cov

AGMAT / Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens
Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens

62% id,
88% cov

W5PHZ9: agmatinase (EC 3.5.3.11) from Ovis aries

61% id,
86% cov

More...

BWI76_RS21925: agmatinase
is similar to:
PaperBLAST

SPEB_PROMI / Q7X3P1: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Proteus mirabilis

42% id,
91% cov

AGMAT / Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens
Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens

44% id,
87% cov

W5PHZ9: agmatinase (EC 3.5.3.11) from Ovis aries

45% id,
85% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4580310-4581359 (frame -3) on NZ_CP020657
is similar to:
PaperBLAST

AGMAT / Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens
Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens
Also see hits to annotated proteins above

42% id,
93% cov

A0A146AXJ2: agmatinase (EC 3.5.3.11) from Apostichopus japonicus
Also see hits to annotated proteins above

42% id,
92% cov

ARGI1_ARATH / P46637: Arginase 1, mitochondrial; Agmatinase ARGAH1; Arginine amidohydrolase 1; AtARGAH1; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana
Also see hits to annotated proteins above

27% id,
89% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory