Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 22 curated entries in PaperBLAST's database that match '4.1.1.18' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS23360: diaminopimelate decarboxylase
is similar to:
PaperBLAST

A0A0H3H393: lysine decarboxylase (EC 4.1.1.18) from Klebsiella oxytoca

99% id,
100% cov

BWI76_RS07195: lysine decarboxylase CadA
is similar to:
PaperBLAST

A0A094XEM2: lysine decarboxylase (EC 4.1.1.18) from Klebsiella aerogenes

98% id,
100% cov

LDCI_ECOLI / P0A9H3: Inducible lysine decarboxylase; LDCI; EC 4.1.1.18 from Escherichia coli
LdcI / b4131: lysine decarboxylase 1 (EC 4.1.1.18) from Escherichia coli
cadA / RF|NP_418555: lysine decarboxylase, inducible; EC 4.1.1.18 from Escherichia coli
cadA / P0A9H3: lysine decarboxylase 1 (EC 4.1.1.18) from Escherichia coli
P0A9H3: lysine decarboxylase (EC 4.1.1.18) from Escherichia coli

94% id,
100% cov

Q87KT6: lysine decarboxylase (EC 4.1.1.18) from Vibrio parahaemolyticus

75% id,
100% cov

More...

BWI76_RS05300: lysine decarboxylase LdcC
is similar to:
PaperBLAST

A0A0H3FP92: lysine decarboxylase (EC 4.1.1.18) from Klebsiella aerogenes

96% id,
100% cov

LDCC_ECOLI / P52095: Constitutive lysine decarboxylase; LDCC; EC 4.1.1.18 from Escherichia coli
LdcC / b0186: lysine decarboxylase 2 (EC 4.1.1.18) from Escherichia coli
ldcC / GB|BAA21656.1: lysine decarboxylase, constitutive; EC 4.1.1.18 from Escherichia coli
ldcC / P52095: lysine decarboxylase 2 (EC 4.1.1.18) from Escherichia coli
P52095: lysine decarboxylase (EC 4.1.1.18) from Escherichia coli

88% id,
100% cov

A0A094XEM2: lysine decarboxylase (EC 4.1.1.18) from Klebsiella aerogenes

69% id,
100% cov

More...

BWI76_RS14015: L-2,4-diaminobutyrate decarboxylase
is similar to:
PaperBLAST

desA / Q9L072: L-lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor
Q9L072: lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor

39% id,
97% cov

bibA / B6EP92: L-lysine decarboxylase (EC 4.1.1.18) from Aliivibrio salmonicida

35% id,
93% cov

BWI76_RS24175: ornithine decarboxylase
is similar to:
PaperBLAST

Q9Z4R7: lysine decarboxylase (EC 4.1.1.18) from Eikenella corrodens

34% id,
88% cov

LDCA_PSEAE / Q9I2S7: Lysine decarboxylase LdcA; EC 4.1.1.18 from Pseudomonas aeruginosa

36% id,
81% cov

LDCI_ECOLI / P0A9H3: Inducible lysine decarboxylase; LDCI; EC 4.1.1.18 from Escherichia coli
LdcI / b4131: lysine decarboxylase 1 (EC 4.1.1.18) from Escherichia coli
cadA / RF|NP_418555: lysine decarboxylase, inducible; EC 4.1.1.18 from Escherichia coli
cadA / P0A9H3: lysine decarboxylase 1 (EC 4.1.1.18) from Escherichia coli
P0A9H3: lysine decarboxylase (EC 4.1.1.18) from Escherichia coli

36% id,
81% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory