Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 56 curated entries in PaperBLAST's database that match '4.1.1.19'.

These curated entries have 40 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS24030: arginine decarboxylase
is similar to:
PaperBLAST

SPEA_ECOLI / P21170: Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
SpeA / b2938: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli
speA / P21170: biosynthetic arginine decarboxylase (EC 4.1.1.19) from Escherichia coli
P21170: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

95% id,
100% cov

Q8ZHG8: arginine decarboxylase (EC 4.1.1.19) from Yersinia pestis

84% id,
100% cov

Q7MK24: arginine decarboxylase (EC 4.1.1.19) from Vibrio vulnificus

54% id,
100% cov

More...

BWI76_RS05300: lysine decarboxylase LdcC
is similar to:
PaperBLAST

ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
adiA / GI|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli
adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

36% id,
97% cov

E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica

36% id,
97% cov

Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium

29% id,
26% cov

BWI76_RS07195: lysine decarboxylase CadA
is similar to:
PaperBLAST

ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
adiA / GI|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli
adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

35% id,
97% cov

E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica

35% id,
97% cov

Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium

38% id,
13% cov

BWI76_RS24175: ornithine decarboxylase
is similar to:
PaperBLAST

ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
adiA / GI|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli
adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

32% id,
96% cov

E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica

33% id,
87% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory