Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 4 curated entries in PaperBLAST's database that match '4.1.2.20' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS24830: 5-keto-4-deoxy-D-glucarate aldolase
is similar to:
PaperBLAST

GARL_ECOLI / P23522: 5-keto-4-deoxy-D-glucarate aldolase; KDGluc aldolase; KDGlucA; 2-dehydro-3-deoxy-D-glucarate aldolase; 2-keto-3-deoxy-D-glucarate aldolase; 5-dehydro-4-deoxy-D-glucarate aldolase; Alpha-keto-beta-deoxy-D-glucarate aldolase; EC 4.1.2.20 from Escherichia coli
YhaF / b3126: α-dehydro-β-deoxy-D-glucarate aldolase (EC 4.1.2.20) from Escherichia coli
garL / P23522: α-dehydro-β-deoxy-D-glucarate aldolase (EC 4.1.2.20) from Escherichia coli

93% id,
100% cov

BWI76_RS19980: 2-keto-3-deoxy-L-rhamnonate aldolase
is similar to:
PaperBLAST

GARL_ECOLI / P23522: 5-keto-4-deoxy-D-glucarate aldolase; KDGluc aldolase; KDGlucA; 2-dehydro-3-deoxy-D-glucarate aldolase; 2-keto-3-deoxy-D-glucarate aldolase; 5-dehydro-4-deoxy-D-glucarate aldolase; Alpha-keto-beta-deoxy-D-glucarate aldolase; EC 4.1.2.20 from Escherichia coli
YhaF / b3126: α-dehydro-β-deoxy-D-glucarate aldolase (EC 4.1.2.20) from Escherichia coli
garL / P23522: α-dehydro-β-deoxy-D-glucarate aldolase (EC 4.1.2.20) from Escherichia coli

44% id,
99% cov

BWI76_RS26315: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

P75682: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) from Escherichia coli

30% id,
95% cov

BWI76_RS15245: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

P75682: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) from Escherichia coli

31% id,
90% cov

BWI76_RS20905: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

P75682: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) from Escherichia coli

28% id,
93% cov

BWI76_RS03425: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

P75682: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) from Escherichia coli

29% id,
80% cov

BWI76_RS00060: N-acetylneuraminate lyase
is similar to:
PaperBLAST

P75682: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) from Escherichia coli

25% id,
80% cov

BWI76_RS18305: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

P75682: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) from Escherichia coli

30% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory