Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 26 curated entries in PaperBLAST's database that match '4.1.2.4' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS04130: 2-deoxyribose-5-phosphate aldolase is similar to:	PaperBLAST
Q7WT44: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Klebsiella pneumoniae	97% id, 100% cov
DEOC_SALTY / Q8ZJV8: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Salmonella typhimurium	96% id, 100% cov
DEOC_ECOLI / P0A6L0: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Escherichia coli Tlr / b4381: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Escherichia coli deoC / P0A6L0: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Escherichia coli	93% id, 100% cov
A0A125YLW2: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Toxoplasma gondii	37% id, 92% cov
C7E719: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Paenibacillus sp.	37% id, 91% cov
Q9AIP7: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Streptococcus mutans	38% id, 89% cov
DEOC_ACIB4 / B5IEU6: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Aciduliprofundum boonei	37% id, 91% cov
DEOC_THEKO / Q877I0: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Thermococcus kodakarensis Q877I0: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Thermococcus kodakarensis	35% id, 92% cov
DEOC_HUMAN / Q9Y315: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Homo sapiens Q9Y315: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Homo sapiens	39% id, 81% cov
DEOC_THET8 / Q5SJ28: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Thermus thermophilus	32% id, 95% cov
DEOC_BACSU / P39121: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Bacillus subtilis	34% id, 91% cov
A0A1Q2T258: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Haloarcula japonica	29% id, 81% cov
More...

BWI76_RS23665: 2-deoxyribose-5-phosphate aldolase is similar to:	PaperBLAST
C7E719: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Paenibacillus sp.	36% id, 100% cov
DEOC_ACIB4 / B5IEU6: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Aciduliprofundum boonei	36% id, 98% cov
DEOC_BACSU / P39121: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Bacillus subtilis	37% id, 96% cov
DEOC_PSEU2 / Q4ZMV1: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Pseudomonas syringae	38% id, 91% cov
DEOC_THEKO / Q877I0: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Thermococcus kodakarensis Q877I0: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Thermococcus kodakarensis	36% id, 96% cov
DEOC_RHOE4 / C0ZUQ6: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Rhodococcus erythropolis C0ZUQ6: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Rhodococcus erythropolis	35% id, 92% cov
DEOC_THET8 / Q5SJ28: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Thermus thermophilus	34% id, 94% cov
deoC / C0LSK9: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Yersinia sp. C0LSK9: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Yersinia sp.	34% id, 94% cov
Q9AIP7: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Streptococcus mutans	33% id, 95% cov
DEOC_THEMA / Q9X1P5: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Thermotoga maritima	34% id, 88% cov
D5AHU8: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Streptococcus suis	31% id, 95% cov
DEOC_STRP6 / Q5XA31: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Streptococcus pyogenes	30% id, 97% cov
DEOC_PYRAE / Q8ZXK7: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Pyrobaculum aerophilum	31% id, 88% cov
DEOC_HUMAN / Q9Y315: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Homo sapiens Q9Y315: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Homo sapiens	26% id, 66% cov
More...

BWI76_RS18945: 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase is similar to:	PaperBLAST
DEOC_BACSU / P39121: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Bacillus subtilis	42% id, 23% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory