Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 8 curated entries in PaperBLAST's database that match '4.1.3.25'.

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS04445: citrate (pro-3S)-lyase subunit beta
is similar to:
PaperBLAST

MCAL_CERS4 / Q3J5L6: L-malyl-CoA/beta-methylmalyl-CoA lyase; (3S)-malyl-CoA/beta-methylmalyl-CoA lyase; (S)-citramalyl-CoA lyase; EC 4.1.3.24; EC 4.1.3.25 from Cereibacter sphaeroides

33% id,
94% cov

Q9I562: (S)-citramalyl-CoA lyase (EC 4.1.3.25) from Pseudomonas aeruginosa

31% id,
97% cov

A0A172MLA1: (S)-citramalyl-CoA lyase (EC 4.1.3.25); (R)-citramalyl-CoA lyase (EC 4.1.3.46) from Aspergillus terreus

33% id,
91% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

917595-918548 (frame +3) on NZ_CP020657
is similar to:
PaperBLAST

MCAL_CERS4 / Q3J5L6: L-malyl-CoA/beta-methylmalyl-CoA lyase; (3S)-malyl-CoA/beta-methylmalyl-CoA lyase; (S)-citramalyl-CoA lyase; EC 4.1.3.24; EC 4.1.3.25 from Cereibacter sphaeroides
Also see hits to annotated proteins above

33% id,
97% cov

CLYBL_HUMAN / Q8N0X4: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Homo sapiens
Also see hits to annotated proteins above

27% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory