Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 4 curated entries in PaperBLAST's database that match '4.2.1.7' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS24725: altronate hydrolase
is similar to:
PaperBLAST

UXAA_ECOLI / P42604: Altronate dehydratase; D-altronate hydro-lyase; EC 4.2.1.7 from Escherichia coli
YgjW / b3091: D-altronate dehydratase (EC 4.2.1.7) from Escherichia coli
uxaA / P42604: D-altronate dehydratase (EC 4.2.1.7) from Escherichia coli

88% id,
100% cov

CA265_RS19875: Altronate dehydratase (EC 4.2.1.7) from Pedobacter sp.

35% id,
70% cov

CA265_RS19875: Altronate dehydratase (EC 4.2.1.7) from Pedobacter sp.

35% id,
24% cov

BWI76_RS26325: altronate hydrolase
is similar to:
PaperBLAST

CA265_RS19875: Altronate dehydratase (EC 4.2.1.7) from Pedobacter sp.

49% id,
99% cov

UXAA_ECOLI / P42604: Altronate dehydratase; D-altronate hydro-lyase; EC 4.2.1.7 from Escherichia coli
YgjW / b3091: D-altronate dehydratase (EC 4.2.1.7) from Escherichia coli
uxaA / P42604: D-altronate dehydratase (EC 4.2.1.7) from Escherichia coli

33% id,
98% cov

BWI76_RS24840: galactarate dehydratase
is similar to:
PaperBLAST

UXAA_ECOLI / P42604: Altronate dehydratase; D-altronate hydro-lyase; EC 4.2.1.7 from Escherichia coli
YgjW / b3091: D-altronate dehydratase (EC 4.2.1.7) from Escherichia coli
uxaA / P42604: D-altronate dehydratase (EC 4.2.1.7) from Escherichia coli

33% id,
99% cov

CA265_RS19875: Altronate dehydratase (EC 4.2.1.7) from Pedobacter sp.

37% id,
61% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory