Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 28 curated entries in PaperBLAST's database that match '4.2.1.8' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS15895: starvation-sensing protein RspA
is similar to:
PaperBLAST

MAND_ENT38 / A4WA78: D-galactonate dehydratase family member Ent638_1932; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Enterobacter sp.

95% id,
100% cov

MAND_ESCAT / B1ELW6: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia albertii

94% id,
100% cov

MAND_SALG2 / B5RAG0: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Salmonella gallinarum

93% id,
100% cov

More...

BWI76_RS05650: mannonate dehydratase
is similar to:
PaperBLAST

UXUA_ECOLI / P24215: Mannonate dehydratase; D-mannonate hydro-lyase; EC 4.2.1.8 from Escherichia coli
UxuA / b4322: D-mannonate dehydratase (EC 4.2.1.8) from Escherichia coli
uxuA / P24215: D-mannonate dehydratase (EC 4.2.1.8) from Escherichia coli
P24215: mannonate dehydratase (EC 4.2.1.8) from Escherichia coli

94% id,
100% cov

Q1QT83: mannonate dehydratase (EC 4.2.1.8) from Chromohalobacter salexigens

61% id,
99% cov

uxuA / Q9WXS4: D-mannonate dehydratase (EC 4.2.1.8) from Thermotoga maritima

40% id,
98% cov

More...

BWI76_RS23640: mannonate dehydratase
is similar to:
PaperBLAST

uxuA / Q9WXS4: D-mannonate dehydratase (EC 4.2.1.8) from Thermotoga maritima

59% id,
99% cov

A4VVI4: mannonate dehydratase (EC 4.2.1.8) from Streptococcus suis

45% id,
94% cov

Q1QT83: mannonate dehydratase (EC 4.2.1.8) from Chromohalobacter salexigens

39% id,
99% cov

More...

BWI76_RS27935: galactonate dehydratase
is similar to:
PaperBLAST

DMGD_HALED / E1V4Y0: D-galactonate dehydratase family member RspA; D-gluconate dehydratase; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Halomonas elongata

33% id,
100% cov

MAND2_CAUVC / Q9AAR4: D-mannonate dehydratase CC0532; ManD; EC 4.2.1.8 from Caulobacter vibrioides
A0A0H3C643: mannonate dehydratase (EC 4.2.1.8) from Caulobacter vibrioides

32% id,
97% cov

MAND1_CAUSK / B0T0B1: D-mannonate dehydratase Caul1427; ManD; EC 4.2.1.8 from Caulobacter sp.

32% id,
97% cov

More...

BWI76_RS13570: mandelate racemase/muconate lactonizing protein
is similar to:
PaperBLAST

DMGD_HALED / E1V4Y0: D-galactonate dehydratase family member RspA; D-gluconate dehydratase; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Halomonas elongata

28% id,
91% cov

MAND_STRS3 / D9UNB2: D-galactonate dehydratase family member SSLG_02014; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Streptomyces sp.

26% id,
94% cov

MAND_ESCAT / B1ELW6: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia albertii

27% id,
90% cov

More...

BWI76_RS19325: mandelate racemase
is similar to:
PaperBLAST

MAND1_CAUVC / Q9A4L8: D-mannonate dehydratase CC2812; ManD; EC 4.2.1.8 from Caulobacter vibrioides

28% id,
88% cov

MAND1_CAUSK / B0T0B1: D-mannonate dehydratase Caul1427; ManD; EC 4.2.1.8 from Caulobacter sp.

27% id,
89% cov

MAND2_CAUVC / Q9AAR4: D-mannonate dehydratase CC0532; ManD; EC 4.2.1.8 from Caulobacter vibrioides
A0A0H3C643: mannonate dehydratase (EC 4.2.1.8) from Caulobacter vibrioides

38% id,
34% cov

More...

BWI76_RS03435: mandelate racemase/muconate lactonizing protein
is similar to:
PaperBLAST

MAND_SPHSS / Q1NAJ2: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Sphingomonas sp.

25% id,
90% cov

MAND2_CAUSK / B0T4L2: D-mannonate dehydratase Caul1835; ManD; EC 4.2.1.8 from Caulobacter sp.

25% id,
89% cov

MAND_MARMS / A6VRA1: D-galactonate dehydratase family member Mmwyl1_0037; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Marinomonas sp.

25% id,
89% cov

More...

BWI76_RS19990: L-rhamnonate dehydratase
is similar to:
PaperBLAST

MAND_ENT38 / A4WA78: D-galactonate dehydratase family member Ent638_1932; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Enterobacter sp.

27% id,
79% cov

MAND_MARMS / A6VRA1: D-galactonate dehydratase family member Mmwyl1_0037; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Marinomonas sp.

21% id,
92% cov

DMGD_HALED / E1V4Y0: D-galactonate dehydratase family member RspA; D-gluconate dehydratase; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Halomonas elongata

24% id,
48% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory