Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 21 curated entries in PaperBLAST's database that match '4.2.3.1' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS04255: threonine synthase
is similar to:
PaperBLAST

THRC_ECOLI / P00934: Threonine synthase; TS; EC 4.2.3.1 from Escherichia coli
ThrC / b0004: threonine synthase (EC 4.2.3.1) from Escherichia coli
thrC / GB|BAB96581.1: threonine synthase; EC 4.2.3.1 from Escherichia coli
thrC / P00934: threonine synthase (EC 4.2.3.1) from Escherichia coli
P00934: threonine synthase (EC 4.2.3.1) from Escherichia coli

92% id,
100% cov

N515DRAFT_0575: threonine synthase (EC 4.2.3.1) from Dyella japonica

37% id,
94% cov

Q8YFS0: threonine synthase (EC 4.2.3.1) from Brucella melitensis

33% id,
97% cov

More...

BWI76_RS20685: cysteine synthase B
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

30% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4326843-4327760 (frame -3) on NZ_CP020657
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

31% id,
34% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory