Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 60 curated entries in PaperBLAST's database that match '5.1.3.2' as complete word(s).

These curated entries have 42 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS19065: dTDP-glucose 4,6-dehydratase
is similar to:		 PaperBLAST

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

 34% id,
98% cov

F2NQX6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Marinithermus hydrothermalis

 32% id,
98% cov

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

 31% id,
99% cov

More...

BWI76_RS18995: NAD-dependent epimerase
is similar to:		 PaperBLAST

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

 32% id,
99% cov

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

 31% id,
98% cov

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

 31% id,
99% cov

More...

BWI76_RS27260: ADP-L-glycero-D-mannoheptose-6-epimerase
is similar to:		 PaperBLAST

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

 33% id,
83% cov

A3MUJ4: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrobaculum calidifontis

 28% id,
96% cov

F2NQX6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Marinithermus hydrothermalis

 26% id,
99% cov

More...

BWI76_RS20300: epimerase
is similar to:		 PaperBLAST

O73960: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrococcus horikoshii

 28% id,
77% cov

A3MUJ4: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrobaculum calidifontis

 25% id,
84% cov

GALE_NEIMC / P56986: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Neisseria meningitidis

 26% id,
71% cov

More...

BWI76_RS08610: galactose-1-epimerase
is similar to:		 PaperBLAST

P04397: UDP-glucose 4-epimerase (EC 5.1.3.2) from Saccharomyces cerevisiae

 27% id,
46% cov

Q9HDU3: UDP-glucose 4-epimerase (EC 5.1.3.2) from Schizosaccharomyces pombe

 27% id,
44% cov

BWI76_RS09545: NAD-dependent epimerase/dehydratase
is similar to:		 PaperBLAST

A3MUJ4: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrobaculum calidifontis

 26% id,
47% cov

O73960: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrococcus horikoshii

 28% id,
39% cov

GALE_STRTR / P21977: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Streptococcus thermophilus
galE / P21977: UDP-glucose-4-epimerase (EC 5.1.3.2) from Streptococcus thermophilus
P21977: UDP-glucose 4-epimerase (EC 5.1.3.2) from Streptococcus thermophilus

 25% id,
35% cov

BWI76_RS16755: acetoin reductase
is similar to:		 PaperBLAST

GI|1143392: uridine diphosphate glucose epimerase; EC 5.1.3.2 from Arabidopsis thaliana

 28% id,
30% cov

UGE1_ARATH / Q42605: Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1; UDP-D-xylose 4-epimerase; UDP-L-arabinose 4-epimerase; UDP-galactose 4-epimerase 1; UDP-glucose 4-epimerase 1; AtUGE1; EC 5.1.3.2; EC 5.1.3.5 from Arabidopsis thaliana
UGE1 / Q42605: UDP-D-glucose/UDP-D-galactose 4-epimerase subunit (EC 5.1.3.2) from Arabidopsis thaliana
Q42605: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-arabinose 4-epimerase (EC 5.1.3.5) from Arabidopsis thaliana

 28% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1819440-1820435 (frame -3) on NZ_CP020657
is similar to:		 PaperBLAST

GALE_ECOLI / P09147: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Escherichia coli
GalD / b0759: UDP-glucose 4-epimerase (EC 5.1.3.2) from Escherichia coli
galE / P09147: UDP-glucose 4-epimerase (EC 5.1.3.2) from Escherichia coli
Also see hits to annotated proteins above

 92% id,
87% cov

galE / P55180: UDP-glucose 4-epimerase (EC 5.1.3.7; EC 5.1.3.2) from Bacillus subtilis
Also see hits to annotated proteins above

 61% id,
86% cov

GALE_HAEIN / P24325: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Haemophilus influenzae
Also see hits to annotated proteins above

 61% id,
86% cov

More...

1819334-1819633 (frame -1) on NZ_CP020657
is similar to:		 PaperBLAST

GALE_ECOLI / P09147: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Escherichia coli
GalD / b0759: UDP-glucose 4-epimerase (EC 5.1.3.2) from Escherichia coli
galE / P09147: UDP-glucose 4-epimerase (EC 5.1.3.2) from Escherichia coli
Also see hits to annotated proteins above

 96% id,
14% cov

GALE_DICDI / Q553X7: UDP-glucose 4-epimerase; Galactowaldenase; UDP-N-acetylglucosamine 4-epimerase; UDP-GlcNAc 4-epimerase; UDP-galactosamine 4-epimerase; UDP-GalNAc 4-epimerase; UDP-galactose 4-epimerase; EC 5.1.3.2; EC 5.1.3.7 from Dictyostelium discoideum
Also see hits to annotated proteins above

 50% id,
15% cov

A0A0H2URG4: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Streptococcus pneumoniae
Also see hits to annotated proteins above

 52% id,
14% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory