Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 43 curated entries in PaperBLAST's database that match '5.3.1.4' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS04585: L-arabinose isomerase
is similar to:
PaperBLAST

P58539: L-arabinose isomerase (EC 5.3.1.4) from Salmonella enterica

90% id,
100% cov

P06189: L-arabinose isomerase (EC 5.3.1.4) from Salmonella enterica

90% id,
100% cov

ARAA_ECOLI / P08202: L-arabinose isomerase; EC 5.3.1.4 from Escherichia coli
AraA / b0062: L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli
araA / P08202: L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli
P08202: L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli

90% id,
100% cov

More...

BWI76_RS25240: D-arabinose 5-phosphate isomerase
is similar to:
PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

53% id,
99% cov

BWI76_RS22245: arabinose 5-phosphate isomerase GutQ
is similar to:
PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

41% id,
98% cov

BWI76_RS02170: MurR/RpiR family transcriptional regulator
is similar to:
PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

26% id,
43% cov

BWI76_RS21290: DNA-binding transcriptional regulator
is similar to:
PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

26% id,
40% cov

BWI76_RS03980: sugar isomerase (SIS)
is similar to:
PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

24% id,
44% cov

BWI76_RS00065: MurR/RpiR family transcriptional regulator
is similar to:
PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

20% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory