Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 8 curated entries in PaperBLAST's database that match '5.5.1.1' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS13690: muconate and chloromuconate cycloisomerase
is similar to:
PaperBLAST

catB / A0F0B3: muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

58% id,
97% cov

CATB_PSEPU / P08310: Muconate cycloisomerase 1; Cis,cis-muconate lactonizing enzyme I; MLE; Muconate cycloisomerase I; EC 5.5.1.1 from Pseudomonas putida
catB / P08310: muconate lactonizing enzyme subunit (EC 5.5.1.1) from Pseudomonas putida

56% id,
100% cov

salC / Q4KPK2: muconate cycloisomerase I (EC 5.5.1.1; EC 5.5.1.7) from Pseudomonas reinekei
Q4KPK2: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

55% id,
100% cov

More...

BWI76_RS03435: mandelate racemase/muconate lactonizing protein
is similar to:
PaperBLAST

salC / Q4KPK2: muconate cycloisomerase I (EC 5.5.1.1; EC 5.5.1.7) from Pseudomonas reinekei
Q4KPK2: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

25% id,
98% cov

CATB_PSEPU / P08310: Muconate cycloisomerase 1; Cis,cis-muconate lactonizing enzyme I; MLE; Muconate cycloisomerase I; EC 5.5.1.1 from Pseudomonas putida
catB / P08310: muconate lactonizing enzyme subunit (EC 5.5.1.1) from Pseudomonas putida

24% id,
98% cov

BWI76_RS19325: mandelate racemase
is similar to:
PaperBLAST

PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae

25% id,
95% cov

BWI76_RS27935: galactonate dehydratase
is similar to:
PaperBLAST

PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae

25% id,
89% cov

CATB_PSEPU / P08310: Muconate cycloisomerase 1; Cis,cis-muconate lactonizing enzyme I; MLE; Muconate cycloisomerase I; EC 5.5.1.1 from Pseudomonas putida
catB / P08310: muconate lactonizing enzyme subunit (EC 5.5.1.1) from Pseudomonas putida

24% id,
94% cov

catB / A0F0B3: muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

25% id,
87% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory