Searching in Shewanella oneidensis MR-1 (MR1)
Found 76 curated entries in PaperBLAST's database that match '1.1.1.27' as complete word(s).
These curated entries have 63 distinct sequences.
Running ublast with E ≤ 0.01
Found 8 relevant proteins in Shewanella oneidensis MR-1, or try another query
| SO2136: aldehyde-alcohol dehydrogenase (NCBI ptt file) is similar to: | PaperBLAST |
I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum | 50% id, 99% cov |
| SO1519: iron-sulfur cluster-binding protein (NCBI ptt file) is similar to: | PaperBLAST |
lutB / O07021: component of an iron-sulfur oxidase linked to L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis | 38% id, 90% cov |
Q5F883: L-lactate dehydrogenase (subunit 1/3) (EC 1.1.1.27) from Neisseria gonorrhoeae | 40% id, 86% cov |
| SO1520: conserved hypothetical protein (NCBI ptt file) is similar to: | PaperBLAST |
lutA / O07020: iron-sulfur oxidase subunit used in L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis | 33% id, 100% cov |
Q5F885: L-lactate dehydrogenase (subunit 3/3) (EC 1.1.1.27) from Neisseria gonorrhoeae | 31% id, 90% cov |
| SO0770: malate dehydrogenase (NCBI ptt file) is similar to: | PaperBLAST |
Q27797: L-lactate dehydrogenase (EC 1.1.1.27) from Toxoplasma gondii | 28% id, 97% cov |
P90613: L-lactate dehydrogenase (EC 1.1.1.27) from Toxoplasma gondii | 28% id, 94% cov |
E7CXT1: L-lactate dehydrogenase (EC 1.1.1.27) from Thermoanaerobacterium saccharolyticum | 26% id, 98% cov |
| SO1490: alcohol dehydrogenase II (NCBI ptt file) is similar to: | PaperBLAST |
I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum | 40% id, 44% cov |
| SO1518: conserved hypothetical protein (NCBI ptt file) is similar to: | PaperBLAST |
Q5F884: L-lactate dehydrogenase (subunit 2/3) (EC 1.1.1.27) from Neisseria gonorrhoeae | 26% id, 55% cov |
lutC / O32259: component of an iron-sulfur oxidase for L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis | 33% id, 40% cov |
| SOA0164: iron-containing alcohol dehydrogenase (NCBI ptt file) is similar to: | PaperBLAST |
I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum | 44% id, 31% cov |
| SO4469: alcohol dehydrogenase, iron-containing (NCBI ptt file) is similar to: | PaperBLAST |
I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum | 26% id, 37% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 783390-784394 (frame +3) on 139 is similar to: | PaperBLAST |
LDH1_STAAC / Q5HJD7: L-lactate dehydrogenase 1; L-LDH 1; EC 1.1.1.27 from Staphylococcus aureus | 27% id, 98% cov |
LDH_GEOSE / P00344: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Geobacillus stearothermophilus | 27% id, 95% cov |
LDH2_BIFL2 / E8ME30: L-lactate dehydrogenase 2; L-LDH 2; FBP-dependent LDH; EC 1.1.1.27 from Bifidobacterium longum | 26% id, 98% cov |
Lawrence Berkeley National Laboratory