Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 148 curated entries in PaperBLAST's database that match '1.1.1.28'.

These curated entries have 116 distinct sequences.

Running ublast with E ≤ 0.01

Found 30 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO0968: D-lactate dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

Q8EI78: D-lactate dehydrogenase (EC 1.1.1.28) from Shewanella oneidensis

100% id,
100% cov

HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli
ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli
ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

62% id,
100% cov

A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

62% id,
100% cov

More...

SOA0161: zinc-binding dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

FRMA_ECOLI / P25437: S-(hydroxymethyl)glutathione dehydrogenase; Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; EC 1.1.1.284; EC 1.1.1.1; EC 1.1.1.- from Escherichia coli
AdhC / b0356: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Escherichia coli
frmA / GB|BAA22412.1: S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.-; EC 1.1.1.1; EC 1.1.1.284 from Escherichia coli
frmA / P25437: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Escherichia coli

71% id,
100% cov

A0A0A0KBZ1: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Cucumis sativus

67% id,
98% cov

ADHX_SPAAU / P79896: Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Sparus aurata

67% id,
99% cov

More...

SO2054: alcohol dehydrogenase class III (NCBI ptt file)
is similar to:
PaperBLAST

FRMA_ECOLI / P25437: S-(hydroxymethyl)glutathione dehydrogenase; Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; EC 1.1.1.284; EC 1.1.1.1; EC 1.1.1.- from Escherichia coli
AdhC / b0356: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Escherichia coli
frmA / GB|BAA22412.1: S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.-; EC 1.1.1.1; EC 1.1.1.284 from Escherichia coli
frmA / P25437: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Escherichia coli

70% id,
100% cov

ADHX_SPAAU / P79896: Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Sparus aurata

67% id,
99% cov

ADHH_GADMO / P81600: Alcohol dehydrogenase class-3 chain H; Alcohol dehydrogenase class-III chain H; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Gadus morhua

67% id,
99% cov

More...

SO1538: isocitrate dehydrogenase, NAD-dependent (NCBI ptt file)
is similar to:
PaperBLAST

HICDH_THET2 / Q72IW9: Isocitrate/homoisocitrate dehydrogenase; Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.286 from Thermus thermophilus
HICDH_THET8 / Q5SIJ1: Isocitrate/homoisocitrate dehydrogenase; Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.286 from Thermus thermophilus

46% id,
98% cov

IDH-V / Q945K7: NAD+-dependent isocitrate dehydrogenase catalytic subunit (EC 1.1.1.286) from Arabidopsis thaliana

49% id,
88% cov

IDH3A / P50213: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial (EC 1.1.1.286) from Homo sapiens

47% id,
90% cov

More...

SO4235: 3-isopropylmalate dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

HICDH_THET2 / Q72IW9: Isocitrate/homoisocitrate dehydrogenase; Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.286 from Thermus thermophilus
HICDH_THET8 / Q5SIJ1: Isocitrate/homoisocitrate dehydrogenase; Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.286 from Thermus thermophilus

39% id,
100% cov

Q5JFV8: isocitrate-homoisocitrate dehydrogenase (EC 1.1.1.286) from Thermococcus kodakarensis

38% id,
88% cov

HICDH_PYRHO / O59394: Isocitrate/homoisocitrate dehydrogenase; HICDH; Beta-decarboxylating dehydrogenase; EC 1.1.1.286 from Pyrococcus horikoshii

35% id,
87% cov

More...

SO2776: 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI ptt file)
is similar to:
PaperBLAST

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

38% id,
97% cov

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

36% id,
97% cov

SOU1_CANAL / P87219: Sorbose reductase SOU1; Sorbitol utilization protein SOU1; EC 1.1.1.289 from Candida albicans
SOU1 / GI|2183243: Sorbose reductase SOU1; EC 1.1.1.289 from Candida albicans
P87219: sorbose reductase (EC 1.1.1.289) from Candida albicans

38% id,
88% cov

More...

SO1683: 3-oxoacyl-(acyl-carrier-protein) reductase, putative (NCBI ptt file)
is similar to:
PaperBLAST

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

33% id,
98% cov

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

33% id,
98% cov

A0A0K1H1P6: xanthoxin dehydrogenase (EC 1.1.1.288) from Pisum sativum

32% id,
92% cov

More...

SO3631: glycerate dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

35% id,
91% cov

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

35% id,
90% cov

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

32% id,
92% cov

More...

SO2813: oxidoreductase, short chain dehydrogenase/reductase family (NCBI ptt file)
is similar to:
PaperBLAST

A0A0K1H1P6: xanthoxin dehydrogenase (EC 1.1.1.288) from Pisum sativum

33% id,
96% cov

Q7XZH5: xanthoxin dehydrogenase (EC 1.1.1.288) from Oryza sativa

34% id,
91% cov

SOU1_CANAL / P87219: Sorbose reductase SOU1; Sorbitol utilization protein SOU1; EC 1.1.1.289 from Candida albicans
SOU1 / GI|2183243: Sorbose reductase SOU1; EC 1.1.1.289 from Candida albicans
P87219: sorbose reductase (EC 1.1.1.289) from Candida albicans

31% id,
89% cov

More...

SO4382: 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI ptt file)
is similar to:
PaperBLAST

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

32% id,
94% cov

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

31% id,
96% cov

SOU1_CANAL / P87219: Sorbose reductase SOU1; Sorbitol utilization protein SOU1; EC 1.1.1.289 from Candida albicans
SOU1 / GI|2183243: Sorbose reductase SOU1; EC 1.1.1.289 from Candida albicans
P87219: sorbose reductase (EC 1.1.1.289) from Candida albicans

34% id,
85% cov

More...

SO0862: D-3-phosphoglycerate dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

32% id,
93% cov

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

28% id,
93% cov

HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli
ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli
ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

32% id,
81% cov

More...

SO3071: erythronate-4-phosphate dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

30% id,
100% cov

O83080: D-lactate dehydrogenase (EC 1.1.1.28) from Treponema pallidum

28% id,
91% cov

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

30% id,
79% cov

More...

SO2397: oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file)
is similar to:
PaperBLAST

A0A0K1H1P6: xanthoxin dehydrogenase (EC 1.1.1.288) from Pisum sativum

30% id,
97% cov

SOU1_CANAL / P87219: Sorbose reductase SOU1; Sorbitol utilization protein SOU1; EC 1.1.1.289 from Candida albicans
SOU1 / GI|2183243: Sorbose reductase SOU1; EC 1.1.1.289 from Candida albicans
P87219: sorbose reductase (EC 1.1.1.289) from Candida albicans

32% id,
89% cov

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

29% id,
96% cov

More...

SO0040: shikimate 5-dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

Q88K85: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida

31% id,
94% cov

YDIB_ECOLI / P0A6D5: Quinate/shikimate dehydrogenase; NAD-dependent shikimate 5-dehydrogenase; EC 1.1.1.282 from Escherichia coli
YdiB / b1692: quinate/shikimate dehydrogenase (EC 1.1.1.282) from Escherichia coli
ydiB / RF|NP_416207: quinate/shikimate dehydrogenase; EC 1.1.1.282 from Escherichia coli
ydiB / P0A6D5: quinate/shikimate dehydrogenase (EC 1.1.1.282) from Escherichia coli

27% id,
94% cov

A4QB65: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Corynebacterium glutamicum

26% id,
94% cov

More...

SO3263: 3-oxoacyl-(acyl-carrier-protein) reductase, putative (NCBI ptt file)
is similar to:
PaperBLAST

ABA2_ARATH / Q9C826: Xanthoxin dehydrogenase; Protein ABSCISIC ACID DEFICIENT 2; Protein GLUCOSE INSENSITIVE 1; Protein IMPAIRED SUCROSE INDUCTION 4; Protein SALOBRENO 3; Protein SALT RESISTANT 1; Protein SUGAR INSENSITIVE 4; Short-chain alcohol dehydrogenase ABA2; Short-chain dehydrogenase reductase 1; AtSDR1; Xanthoxin oxidase; EC 1.1.1.288 from Arabidopsis thaliana
ABA2 / Q9C826: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana
Q9C826: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

32% id,
90% cov

SOU1_CANAL / P87219: Sorbose reductase SOU1; Sorbitol utilization protein SOU1; EC 1.1.1.289 from Candida albicans
SOU1 / GI|2183243: Sorbose reductase SOU1; EC 1.1.1.289 from Candida albicans
P87219: sorbose reductase (EC 1.1.1.289) from Candida albicans

29% id,
86% cov

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

29% id,
86% cov

SO4673: threonine 3-dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

ARD1_UROFA / Q4R0J7: D-arabinitol dehydrogenase 1; NADP-dependent D-arabitol dehydrogenase; EC 1.1.1.287 from Uromyces fabae
Q4R0J7: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Uromyces viciae-fabae

29% id,
93% cov

ADHX_DROME / P46415: Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; Octanol dehydrogenase; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.73; EC 1.1.1.284 from Drosophila melanogaster

27% id,
97% cov

J7GHV7: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Lactuca sativa

27% id,
97% cov

More...

SO2935: oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file)
is similar to:
PaperBLAST

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

27% id,
95% cov

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

27% id,
76% cov

SO3189: polysaccharide biosynthesis protein (NCBI ptt file)
is similar to:
PaperBLAST

RMD_PSEAE / Q9HTB6: GDP-6-deoxy-D-mannose reductase; EC 1.1.1.281 from Pseudomonas aeruginosa
Q9HTB6: GDP-4-dehydro-6-deoxy-D-mannose reductase (EC 1.1.1.281) from Pseudomonas aeruginosa

28% id,
88% cov

RMD_ANETH / Q6T1X6: GDP-6-deoxy-D-mannose reductase; EC 1.1.1.281 from Aneurinibacillus thermoaerophilus

28% id,
85% cov

SO3167: dTDP-glucose 4,6-dehydratase (NCBI ptt file)
is similar to:
PaperBLAST

RMD_PSEAE / Q9HTB6: GDP-6-deoxy-D-mannose reductase; EC 1.1.1.281 from Pseudomonas aeruginosa
Q9HTB6: GDP-4-dehydro-6-deoxy-D-mannose reductase (EC 1.1.1.281) from Pseudomonas aeruginosa

25% id,
97% cov

SO4141: oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file)
is similar to:
PaperBLAST

Q7XZH5: xanthoxin dehydrogenase (EC 1.1.1.288) from Oryza sativa

28% id,
83% cov

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

29% id,
80% cov

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

29% id,
70% cov

SO0438: oxidoreductase, short chain dehydrogenase/reductase family (NCBI ptt file)
is similar to:
PaperBLAST

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

35% id,
65% cov

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

29% id,
72% cov

A0A0K1H1P6: xanthoxin dehydrogenase (EC 1.1.1.288) from Pisum sativum

24% id,
84% cov

More...

SO3382: oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file)
is similar to:
PaperBLAST

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

28% id,
74% cov

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

27% id,
74% cov

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

26% id,
75% cov

SO1521: iron-sulfur cluster-binding protein (NCBI ptt file)
is similar to:
PaperBLAST

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

23% id,
87% cov

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

26% id,
60% cov

SO0585: D-isomer specific 2-hydroxyacid dehydrogenase family protein (NCBI ptt file)
is similar to:
PaperBLAST

Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum

24% id,
79% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

28% id,
68% cov

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

22% id,
81% cov

More...

SO3188: dTDP-glucose 4,6-dehydratase (NCBI ptt file)
is similar to:
PaperBLAST

RMD_PSEAE / Q9HTB6: GDP-6-deoxy-D-mannose reductase; EC 1.1.1.281 from Pseudomonas aeruginosa
Q9HTB6: GDP-4-dehydro-6-deoxy-D-mannose reductase (EC 1.1.1.281) from Pseudomonas aeruginosa

24% id,
80% cov

RMD_ANETH / Q6T1X6: GDP-6-deoxy-D-mannose reductase; EC 1.1.1.281 from Aneurinibacillus thermoaerophilus

23% id,
72% cov

SO0510: oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file)
is similar to:
PaperBLAST

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

23% id,
82% cov

SO2643: oxidoreductase, FAD-binding, putative (NCBI ptt file)
is similar to:
PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

29% id,
60% cov

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

23% id,
56% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

26% id,
45% cov

More...

SO1911: oxidoreductase, short chain dehydrogenase/reductase family (NCBI ptt file)
is similar to:
PaperBLAST

A0A0K1H1P6: xanthoxin dehydrogenase (EC 1.1.1.288) from Pisum sativum

26% id,
49% cov

SO2443: thiF protein, putative (NCBI ptt file)
is similar to:
PaperBLAST

Q88JP1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida

30% id,
32% cov

SO4174: NAD dependent epimerase/dehydratase family protein (NCBI ptt file)
is similar to:
PaperBLAST

A0A1D8NEA1: methylglyoxal reductase (NADPH) (EC 1.1.1.283) from Yarrowia lipolytica

52% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 29 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4870959-4872011 (frame -2) on 139
is similar to:
PaperBLAST

ARD1_UROFA / Q4R0J7: D-arabinitol dehydrogenase 1; NADP-dependent D-arabitol dehydrogenase; EC 1.1.1.287 from Uromyces fabae
Q4R0J7: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Uromyces viciae-fabae
Also see hits to annotated proteins above

29% id,
98% cov

463830-464654 (frame +3) on 139
is similar to:
PaperBLAST

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana
Also see hits to annotated proteins above

34% id,
68% cov

1594225-1597092 (frame -1) on 139
is similar to:
PaperBLAST

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus
Also see hits to annotated proteins above

22% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory