Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 31 curated entries in PaperBLAST's database that match '1.1.1.28' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO0968: D-lactate dehydrogenase (NCBI ptt file) is similar to:	PaperBLAST
Q8EI78: D-lactate dehydrogenase (EC 1.1.1.28) from Shewanella oneidensis	100% id, 100% cov
HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	62% id, 100% cov
A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	62% id, 100% cov
Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa	57% id, 96% cov
Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum	49% id, 98% cov
F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus	45% id, 95% cov
ldhD / Q88VJ2: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Lactiplantibacillus plantarum C0LJH4: D-lactate dehydrogenase (EC 1.1.1.28) from Lactiplantibacillus plantarum	37% id, 90% cov
A0A0R1RJ30: D-lactate dehydrogenase (EC 1.1.1.28) from Furfurilactobacillus rossiae	39% id, 86% cov
CH_091795: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus pentosus	37% id, 90% cov
CH_091801: D-lactate dehydrogenase; EC 1.1.1.28 from Leuconostoc mesenteroides D-ldh / P51011: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Leuconostoc mesenteroides	36% id, 91% cov
F8RPR8: D-lactate dehydrogenase (EC 1.1.1.28) from Weizmannia coagulans	35% id, 93% cov
LDHD_LACDA / P26297: D-lactate dehydrogenase; D-LDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii ldhA / OMNI\|NTL01LD0096: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii	35% id, 92% cov
vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium	33% id, 95% cov
O83080: D-lactate dehydrogenase (EC 1.1.1.28) from Treponema pallidum	34% id, 91% cov
Q1GAA2: D-lactate dehydrogenase (EC 1.1.1.28); D-2-hydroxyacid dehydrogenase (NAD+) (EC 1.1.1.345) from Lactobacillus delbrueckii	32% id, 97% cov
O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus	37% id, 83% cov
E0NDE9: D-lactate dehydrogenase (EC 1.1.1.28) from Pediococcus acidilactici	34% id, 89% cov
LDHD_PEDAC / Q59642: D-lactate/D-glycerate dehydrogenase; D-LDH/GDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28; EC 1.1.1.29 from Pediococcus acidilactici ldhD / GI\|897794: D-lactate dehydrogenase; EC 1.1.1.28; EC 1.1.1.81 from Pediococcus acidilactici	33% id, 89% cov
GB\|CAA47255.1: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus helveticus P30901: D-lactate dehydrogenase (EC 1.1.1.28) from Lactobacillus helveticus	33% id, 89% cov
A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus	29% id, 95% cov
2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera	28% id, 76% cov
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SO3631: glycerate dehydrogenase (NCBI ptt file) is similar to:	PaperBLAST
F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus	35% id, 91% cov
Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa	35% id, 90% cov
O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus	32% id, 92% cov
Q8EI78: D-lactate dehydrogenase (EC 1.1.1.28) from Shewanella oneidensis	32% id, 88% cov
HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	32% id, 86% cov
A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	32% id, 86% cov
A0A0R1RJ30: D-lactate dehydrogenase (EC 1.1.1.28) from Furfurilactobacillus rossiae	30% id, 88% cov
Q1GAA2: D-lactate dehydrogenase (EC 1.1.1.28); D-2-hydroxyacid dehydrogenase (NAD+) (EC 1.1.1.345) from Lactobacillus delbrueckii	32% id, 83% cov
Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum	30% id, 87% cov
2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera	32% id, 79% cov
vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium	31% id, 81% cov
F8RPR8: D-lactate dehydrogenase (EC 1.1.1.28) from Weizmannia coagulans	29% id, 86% cov
A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus	31% id, 79% cov
LDHD_LACDA / P26297: D-lactate dehydrogenase; D-LDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii ldhA / OMNI\|NTL01LD0096: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii	27% id, 86% cov
CH_091801: D-lactate dehydrogenase; EC 1.1.1.28 from Leuconostoc mesenteroides D-ldh / P51011: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Leuconostoc mesenteroides	26% id, 87% cov
O83080: D-lactate dehydrogenase (EC 1.1.1.28) from Treponema pallidum	29% id, 77% cov
GB\|CAA47255.1: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus helveticus P30901: D-lactate dehydrogenase (EC 1.1.1.28) from Lactobacillus helveticus	26% id, 85% cov
E0NDE9: D-lactate dehydrogenase (EC 1.1.1.28) from Pediococcus acidilactici	26% id, 87% cov
LDHD_PEDAC / Q59642: D-lactate/D-glycerate dehydrogenase; D-LDH/GDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28; EC 1.1.1.29 from Pediococcus acidilactici ldhD / GI\|897794: D-lactate dehydrogenase; EC 1.1.1.28; EC 1.1.1.81 from Pediococcus acidilactici	25% id, 87% cov
ldhD / Q88VJ2: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Lactiplantibacillus plantarum C0LJH4: D-lactate dehydrogenase (EC 1.1.1.28) from Lactiplantibacillus plantarum	25% id, 86% cov
CH_091795: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus pentosus	25% id, 86% cov
More...

SO0862: D-3-phosphoglycerate dehydrogenase (NCBI ptt file) is similar to:	PaperBLAST
A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus	32% id, 93% cov
O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus	28% id, 93% cov
HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	32% id, 81% cov
A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	32% id, 81% cov
Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa	31% id, 81% cov
E0NDE9: D-lactate dehydrogenase (EC 1.1.1.28) from Pediococcus acidilactici	29% id, 85% cov
LDHD_PEDAC / Q59642: D-lactate/D-glycerate dehydrogenase; D-LDH/GDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28; EC 1.1.1.29 from Pediococcus acidilactici ldhD / GI\|897794: D-lactate dehydrogenase; EC 1.1.1.28; EC 1.1.1.81 from Pediococcus acidilactici	29% id, 85% cov
2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera	30% id, 83% cov
F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus	28% id, 87% cov
LDHD_LACDA / P26297: D-lactate dehydrogenase; D-LDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii ldhA / OMNI\|NTL01LD0096: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii	32% id, 77% cov
Q8EI78: D-lactate dehydrogenase (EC 1.1.1.28) from Shewanella oneidensis	30% id, 80% cov
F8RPR8: D-lactate dehydrogenase (EC 1.1.1.28) from Weizmannia coagulans	26% id, 92% cov
ldhD / Q88VJ2: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Lactiplantibacillus plantarum C0LJH4: D-lactate dehydrogenase (EC 1.1.1.28) from Lactiplantibacillus plantarum	27% id, 85% cov
vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium	28% id, 81% cov
CH_091795: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus pentosus	27% id, 85% cov
Q1GAA2: D-lactate dehydrogenase (EC 1.1.1.28); D-2-hydroxyacid dehydrogenase (NAD+) (EC 1.1.1.345) from Lactobacillus delbrueckii	29% id, 74% cov
A0A0R1RJ30: D-lactate dehydrogenase (EC 1.1.1.28) from Furfurilactobacillus rossiae	29% id, 75% cov
O83080: D-lactate dehydrogenase (EC 1.1.1.28) from Treponema pallidum	29% id, 73% cov
Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum	27% id, 77% cov
GB\|CAA47255.1: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus helveticus P30901: D-lactate dehydrogenase (EC 1.1.1.28) from Lactobacillus helveticus	30% id, 70% cov
CH_091801: D-lactate dehydrogenase; EC 1.1.1.28 from Leuconostoc mesenteroides D-ldh / P51011: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Leuconostoc mesenteroides	30% id, 69% cov
More...

SO3071: erythronate-4-phosphate dehydrogenase (NCBI ptt file) is similar to:	PaperBLAST
A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus	30% id, 100% cov
O83080: D-lactate dehydrogenase (EC 1.1.1.28) from Treponema pallidum	28% id, 91% cov
F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus	30% id, 79% cov
O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus	30% id, 76% cov
LDHD_LACDA / P26297: D-lactate dehydrogenase; D-LDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii ldhA / OMNI\|NTL01LD0096: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii	27% id, 82% cov
GB\|CAA47255.1: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus helveticus P30901: D-lactate dehydrogenase (EC 1.1.1.28) from Lactobacillus helveticus	25% id, 86% cov
Q1GAA2: D-lactate dehydrogenase (EC 1.1.1.28); D-2-hydroxyacid dehydrogenase (NAD+) (EC 1.1.1.345) from Lactobacillus delbrueckii	26% id, 77% cov
HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	29% id, 62% cov
A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	29% id, 62% cov
More...

SO1521: iron-sulfur cluster-binding protein (NCBI ptt file) is similar to:	PaperBLAST
A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus	23% id, 87% cov
Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix	26% id, 60% cov

SO0585: D-isomer specific 2-hydroxyacid dehydrogenase family protein (NCBI ptt file) is similar to:	PaperBLAST
Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum	24% id, 79% cov
A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus	28% id, 68% cov
2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera	22% id, 81% cov
LDHD_LACDA / P26297: D-lactate dehydrogenase; D-LDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii ldhA / OMNI\|NTL01LD0096: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii	21% id, 74% cov
vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium	27% id, 55% cov
Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa	27% id, 48% cov
More...

SO2643: oxidoreductase, FAD-binding, putative (NCBI ptt file) is similar to:	PaperBLAST
Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix	29% id, 60% cov
A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus	23% id, 56% cov
G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae	26% id, 45% cov
Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix	32% id, 29% cov
G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae	35% id, 23% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1594225-1597092 (frame -1) on 139 is similar to:	PaperBLAST
A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus Also see hits to annotated proteins above	22% id, 94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory