Searching in Shewanella oneidensis MR-1 (MR1)
Found 10 curated entries in PaperBLAST's database that match '1.1.1.46' as complete word(s).
These curated entries have 10 distinct sequences.
Running ublast with E ≤ 0.01
Found 11 relevant proteins in Shewanella oneidensis MR-1, or try another query
| SO2813: oxidoreductase, short chain dehydrogenase/reductase family (NCBI ptt file) is similar to: | PaperBLAST |
HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae | 35% id, 98% cov |
BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans | 33% id, 92% cov |
Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens | 31% id, 93% cov |
| SO3263: 3-oxoacyl-(acyl-carrier-protein) reductase, putative (NCBI ptt file) is similar to: | PaperBLAST |
Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp. | 34% id, 95% cov |
BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans | 32% id, 91% cov |
Ac3H11_614: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Acidovorax sp. | 31% id, 90% cov |
| SO2776: 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI ptt file) is similar to: | PaperBLAST |
Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens | 34% id, 93% cov |
Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens | 34% id, 93% cov |
PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens | 33% id, 93% cov |
| SO1683: 3-oxoacyl-(acyl-carrier-protein) reductase, putative (NCBI ptt file) is similar to: | PaperBLAST |
BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans | 30% id, 92% cov |
AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens | 29% id, 91% cov |
Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens | 29% id, 91% cov |
| SO4382: 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI ptt file) is similar to: | PaperBLAST |
Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp. | 29% id, 95% cov |
| SO2397: oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file) is similar to: | PaperBLAST |
Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp. | 27% id, 96% cov |
| SO4141: oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file) is similar to: | PaperBLAST |
HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae | 27% id, 89% cov |
| SO2935: oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file) is similar to: | PaperBLAST |
HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae | 26% id, 92% cov |
Ac3H11_614: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Acidovorax sp. | 27% id, 87% cov |
AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens | 26% id, 89% cov |
| SO0438: oxidoreductase, short chain dehydrogenase/reductase family (NCBI ptt file) is similar to: | PaperBLAST |
AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens | 30% id, 74% cov |
Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens | 29% id, 75% cov |
PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens | 29% id, 74% cov |
| SO1911: oxidoreductase, short chain dehydrogenase/reductase family (NCBI ptt file) is similar to: | PaperBLAST |
Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens | 28% id, 68% cov |
AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens | 28% id, 68% cov |
PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens | 28% id, 68% cov |
| SO1745: 3-beta hydroxysteroid dehydrogenase/isomerase family protein (NCBI ptt file) is similar to: | PaperBLAST |
D4GP33: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376); L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Haloferax volcanii | 30% id, 58% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 11 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 2934474-2935271 (frame -2) on 139 is similar to: | PaperBLAST |
HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae | 35% id, 100% cov |
Lawrence Berkeley National Laboratory