Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 5 curated entries in PaperBLAST's database that match '1.1.3.21' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO0978: FAD-dependent glycerol-3-phosphate dehydrogenase, family protein (NCBI ptt file)
is similar to:
PaperBLAST

GLPO_ENTCA / O86963: Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus

28% id,
55% cov

Q833L7: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus faecalis

28% id,
54% cov

SO2052: hypothetical oxidoreductase (NCBI ptt file)
is similar to:
PaperBLAST

GLPO_MYCPN / P75063: Glycerol 3-phosphate oxidase; GlpO; L-alpha-glycerophosphate oxidase; EC 1.1.3.21 from Mycoplasma pneumoniae

45% id,
13% cov

GLPO_ENTCA / O86963: Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus

43% id,
8% cov

Q833L7: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus faecalis

39% id,
8% cov

SO1264: hypothetical oxidoreductase (NCBI ptt file)
is similar to:
PaperBLAST

GLPO_ENTCA / O86963: Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus

27% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory