Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 22 curated entries in PaperBLAST's database that match '1.14.16.1' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO1666: phenylalanine-4-hydroxylase (NCBI ptt file) is similar to:	PaperBLAST
SO1666: Phenylalanine 4-monooxygenase (EC 1.14.16.1) from Shewanella oneidensis	100% id, 100% cov
AO356_03975: Phenylalanine 4-monooxygenase (EC 1.14.16.1) from Pseudomonas fluorescens	63% id, 98% cov
Pf6N2E2_2630: Phenylalanine 4-monooxygenase (EC 1.14.16.1) from Pseudomonas fluorescens	63% id, 98% cov
PfGW456L13_4394: Phenylalanine 4-monooxygenase (EC 1.14.16.1) from Pseudomonas fluorescens	63% id, 98% cov
AO353_18585: Phenylalanine 4-monooxygenase (EC 1.14.16.1) from Pseudomonas fluorescens	62% id, 98% cov
Q47XN7: phenylalanine 4-monooxygenase (EC 1.14.16.1) from Colwellia psychrerythraea	62% id, 98% cov
Ac3H11_1847: Phenylalanine 4-monooxygenase (EC 1.14.16.1) from Acidovorax sp.	44% id, 87% cov
phhA / P30967: phenylalanine hydroxylase (EC 1.14.16.1) from Chromobacterium violaceum P30967: phenylalanine 4-monooxygenase (EC 1.14.16.1) from Chromobacterium violaceum	45% id, 77% cov
PH4H_PINTA / E5KBU3: Phenylalanine 4-monooxygenase, chloroplastic; Aromatic amino acid hydroxylase; Phenylalanine 4-hydroxylase; EC 1.14.16.1 from Pinus taeda	36% id, 59% cov
PH4H_CHLRE / A8HQD7: Phenylalanine 4-monooxygenase, chloroplastic; Aromatic amino acid hydroxylase; Phenylalanine 4-hydroxylase; EC 1.14.16.1 from Chlamydomonas reinhardtii PAH / A8HQD7: phenylalanine hydroxylase (EC 1.14.16.1) from Chlamydomonas reinhardtii	34% id, 63% cov
PH4H_DICDI / Q54XS1: Phenylalanine-4-hydroxylase; PAH; Phe-4-monooxygenase; Tryptophan 5-hydroxylase; TRH; Tryptophan 5-monooxygenase; EC 1.14.16.1; EC 1.14.16.4 from Dictyostelium discoideum	38% id, 52% cov
PH4H_PHYPA / E5KBU4: Phenylalanine 4-monooxygenase, chloroplastic; Aromatic amino acid hydroxylase; Phenylalanine 4-hydroxylase; EC 1.14.16.1 from Physcomitrium patens PAH / E5KBU4: phenylalanine hydroxylase (EC 1.14.16.1) from Physcomitrium patens	34% id, 57% cov
PH4H_CAEEL / P90925: Phenylalanine-4-hydroxylase; PAH; Biogenic amine synthesis protein 2; Phe-4-monooxygenase; Tryptophan 5-monooxygenase; EC 1.14.16.1; EC 1.14.16.4 from Caenorhabditis elegans	38% id, 49% cov
PH4H_HUMAN / P00439: Phenylalanine-4-hydroxylase; PAH; Phe-4-monooxygenase; EC 1.14.16.1 from Homo sapiens PAH / P00439: phenylalanine hydroxylase subunit (EC 1.14.16.1) from Homo sapiens P00439: phenylalanine 4-monooxygenase (EC 1.14.16.1) from Homo sapiens	34% id, 54% cov
PH4H_RAT / P04176: Phenylalanine-4-hydroxylase; PAH; Phe-4-monooxygenase; EC 1.14.16.1 from Rattus norvegicus P04176: phenylalanine 4-monooxygenase (EC 1.14.16.1) from Rattus norvegicus	33% id, 54% cov
Q8TEY0: phenylalanine 4-monooxygenase (EC 1.14.16.1) from Homo sapiens	33% id, 54% cov
More...

SO1367: chorismate mutase/prephenate dehydratase (NCBI ptt file) is similar to:	PaperBLAST
PH4H_DICDI / Q54XS1: Phenylalanine-4-hydroxylase; PAH; Phe-4-monooxygenase; Tryptophan 5-hydroxylase; TRH; Tryptophan 5-monooxygenase; EC 1.14.16.1; EC 1.14.16.4 from Dictyostelium discoideum	26% id, 17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory