Searching in Shewanella oneidensis MR-1 (MR1)
Found 9 curated entries in PaperBLAST's database that match '1.2.1.18'.
These curated entries have 9 distinct sequences.
Running ublast with E ≤ 0.01
Found 8 relevant proteins in Shewanella oneidensis MR-1, or try another query
| SO1678: methylmalonate-semialdehyde dehydrogenase (NCBI ptt file) is similar to: | PaperBLAST |
Q02252: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18); methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Homo sapiens | 54% id, 91% cov |
PS417_10925: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas simiae | 51% id, 97% cov |
Q9EQ20: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Mus musculus | 53% id, 91% cov |
| SO3496: aldehyde dehydrogenase (NCBI ptt file) is similar to: | PaperBLAST |
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis | 33% id, 97% cov |
SMc00781: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Sinorhizobium meliloti | 32% id, 96% cov |
dddC / C8YX90: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Halomonas sp. | 32% id, 95% cov |
| SO4480: aldehyde dehydrogenase (NCBI ptt file) is similar to: | PaperBLAST |
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis | 32% id, 99% cov |
SMc00781: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Sinorhizobium meliloti | 30% id, 92% cov |
dddC / C8YX90: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Halomonas sp. | 29% id, 92% cov |
| SO0619: succinylglutamic semialdehyde dehydrogenase (NCBI ptt file) is similar to: | PaperBLAST |
Pf6N2E2_515: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens | 32% id, 91% cov |
AO356_23175: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens | 31% id, 91% cov |
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis | 29% id, 95% cov |
| SO1275: succinate-semialdehyde dehydrogenase (NCBI ptt file) is similar to: | PaperBLAST |
dddC / C8YX90: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Halomonas sp. | 31% id, 94% cov |
PS417_10925: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas simiae | 31% id, 92% cov |
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis | 30% id, 96% cov |
| SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase, putative (NCBI ptt file) is similar to: | PaperBLAST |
SMc00781: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Sinorhizobium meliloti | 29% id, 96% cov |
Pf6N2E2_515: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens | 28% id, 97% cov |
AO356_23175: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens | 28% id, 97% cov |
| SO3683: coniferyl aldehyde dehydrogenase (NCBI ptt file) is similar to: | PaperBLAST |
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis | 25% id, 86% cov |
Pf6N2E2_515: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens | 25% id, 87% cov |
AO356_23175: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas fluorescens | 25% id, 87% cov |
| SO2136: aldehyde-alcohol dehydrogenase (NCBI ptt file) is similar to: | PaperBLAST |
PS417_10925: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas simiae | 23% id, 82% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 10 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 1764405-1766003 (frame +3) on 139 is similar to: | PaperBLAST |
Q02252: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18); methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Homo sapiens | 52% id, 97% cov |
ALD6 / A0A1D8PM94: malonate semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.18) from Candida albicans | 43% id, 96% cov |
Lawrence Berkeley National Laboratory