Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 2 curated entries in PaperBLAST's database that match '1.2.1.21'.

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO1275: succinate-semialdehyde dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

Ald / b1415: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli
aldA / P25553: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli

38% id,
99% cov

SO4480: aldehyde dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

Ald / b1415: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli
aldA / P25553: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli

32% id,
98% cov

SO1678: methylmalonate-semialdehyde dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

Ald / b1415: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli
aldA / P25553: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli

32% id,
97% cov

SO0619: succinylglutamic semialdehyde dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

Ald / b1415: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli
aldA / P25553: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli

32% id,
95% cov

SO3496: aldehyde dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

Ald / b1415: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli
aldA / P25553: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli

30% id,
100% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase, putative (NCBI ptt file)
is similar to:
PaperBLAST

Ald / b1415: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli
aldA / P25553: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli

28% id,
96% cov

SO3683: coniferyl aldehyde dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

Ald / b1415: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli
aldA / P25553: aldehyde dehydrogenase A (EC 1.2.1.22; EC 1.2.1.21) from Escherichia coli

29% id,
75% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory