Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 157 curated entries in PaperBLAST's database that match '1.2.1.3'.

These curated entries have 118 distinct sequences.

Running ublast with E ≤ 0.01

Found 22 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO4480: aldehyde dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

Psest_2276: Aldehyde dehydrogenase (EC 1.2.1.3) from Pseudomonas stutzeri

75% id,
100% cov

BWI76_RS21985: acetaldehyde dehydrogenase (EC 1.2.1.3) from Klebsiella michiganensis

72% id,
100% cov

HP15_3144: Aldehyde dehydrogenase (EC 1.2.1.3) from Marinobacter adhaerens

75% id,
95% cov

More...

SO2136: aldehyde-alcohol dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

58% id,
100% cov

A9KN57: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Lachnoclostridium phytofermentans

33% id,
87% cov

ALDH3_YEAST / P54114: Aldehyde dehydrogenase [NAD(P)+] 2; EC 1.2.1.3 from Saccharomyces cerevisiae
ALD3 / P54114: aldehyde dehydrogenase (EC 1.2.1.3) from Saccharomyces cerevisiae

21% id,
67% cov

More...

SO0619: succinylglutamic semialdehyde dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

P76217: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Escherichia coli

58% id,
99% cov

Q5P171: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Aromatoleum aromaticum

34% id,
92% cov

AL2C4_ARATH / Q56YU0: Aldehyde dehydrogenase family 2 member C4; ALDH1a; Protein REDUCED EPIDERMAL FLUORESCENCE 1; EC 1.2.1.3 from Arabidopsis thaliana

31% id,
96% cov

More...

SO1275: succinate-semialdehyde dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

P51650: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Rattus norvegicus

55% id,
91% cov

P24549: retinal dehydrogenase (EC 1.2.1.36) from Mus musculus

38% id,
97% cov

V4GH04: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas putida

37% id,
98% cov

More...

SO0275: N-acetyl-gamma-glutamyl-phosphate reductase (NCBI ptt file)
is similar to:
PaperBLAST

ARGC_ECOLI / P11446: N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase; EC 1.2.1.38 from Escherichia coli
ArgC / b3958: N-acetylglutamylphosphate reductase (EC 1.2.1.38) from Escherichia coli
argC / P11446: N-acetylglutamylphosphate reductase (EC 1.2.1.38) from Escherichia coli
P11446: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) from Escherichia coli

50% id,
98% cov

ARGC_GEOSE / Q07906: N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase; EC 1.2.1.38 from Geobacillus stearothermophilus

39% id,
95% cov

P9WPZ9: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) from Mycobacterium tuberculosis

34% id,
92% cov

More...

SO3496: aldehyde dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

ALDH4_BACSU / O34660: Putative aldehyde dehydrogenase DhaS; EC 1.2.1.3 from Bacillus subtilis

45% id,
96% cov

AL1A1_MACFA / Q8HYE4: Retinal dehydrogenase 1; RALDH 1; RalDH1; Aldehyde dehydrogenase, cytosolic; EC 1.2.1.-; EC 1.2.1.36 from Macaca fascicularis

42% id,
99% cov

AL1A1_RAT / P51647: Retinal dehydrogenase 1; RALDH 1; RalDH1; ALDH-E1; ALHDII; Aldehyde dehydrogenase family 1 member A1; Aldehyde dehydrogenase, cytosolic; EC 1.2.1.-; EC 1.2.1.36 from Rattus norvegicus
P51647: retinal dehydrogenase (EC 1.2.1.36) from Rattus norvegicus

42% id,
98% cov

More...

SO3683: coniferyl aldehyde dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

AL3B2_HUMAN / P48448: Aldehyde dehydrogenase family 3 member B2; Aldehyde dehydrogenase 8; EC 1.2.1.3 from Homo sapiens

38% id,
97% cov

ALDH3_BACSU / P46329: Putative aldehyde dehydrogenase AldX; EC 1.2.1.3 from Bacillus subtilis

38% id,
96% cov

ALDH_PSEOL / P12693: Aldehyde dehydrogenase; EC 1.2.1.3 from Pseudomonas oleovorans

40% id,
90% cov

More...

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase, putative (NCBI ptt file)
is similar to:
PaperBLAST

YdbG / b1385: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli
feaB / P80668: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli
P80668: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli

33% id,
99% cov

Q5P171: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Aromatoleum aromaticum

33% id,
95% cov

V4GH04: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas putida

32% id,
94% cov

More...

SO1678: methylmalonate-semialdehyde dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

ALDH4_BACSU / O34660: Putative aldehyde dehydrogenase DhaS; EC 1.2.1.3 from Bacillus subtilis

33% id,
95% cov

ALDH_DAVTA / P40108: Aldehyde dehydrogenase; ALDDH; ALDH; Allergen Cla h 3; Allergen Cla h III; Allergen Cla h 10; EC 1.2.1.3 from Davidiella tassiana

32% id,
95% cov

V4GH04: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas putida

31% id,
96% cov

More...

SO2054: alcohol dehydrogenase class III (NCBI ptt file)
is similar to:
PaperBLAST

ADH_CUPNH / Q0KDL6: Alcohol dehydrogenase; EC 1.1.1.1; EC 1.1.1.4; EC 1.2.1.3 from Cupriavidus necator

31% id,
95% cov

SO4673: threonine 3-dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

ADH_CUPNH / Q0KDL6: Alcohol dehydrogenase; EC 1.1.1.1; EC 1.1.1.4; EC 1.2.1.3 from Cupriavidus necator

29% id,
98% cov

SO1490: alcohol dehydrogenase II (NCBI ptt file)
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

33% id,
47% cov

SOA0164: iron-containing alcohol dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

32% id,
46% cov

SO0640: alcohol dehydrogenase, zinc-containing (NCBI ptt file)
is similar to:
PaperBLAST

ADH_CUPNH / Q0KDL6: Alcohol dehydrogenase; EC 1.1.1.1; EC 1.1.1.4; EC 1.2.1.3 from Cupriavidus necator

30% id,
42% cov

SO0355: AMP-binding protein (NCBI ptt file)
is similar to:
PaperBLAST

CAR_NOCIO / Q6RKB1: Carboxylic acid reductase; CAR; ATP/NADPH-dependent carboxylic acid reductase; Aryl aldehyde oxidoreductase; EC 1.2.1.-; EC 1.2.1.30 from Nocardia iowensis
car / Q6RKB1: carboxylic acid reductase (EC 1.2.1.30) from Nocardia iowensis
Q6RKB1: aryl-aldehyde dehydrogenase (NADP+) (EC 1.2.1.30) from Nocardia iowensis

27% id,
34% cov

B2HN69: aryl-aldehyde dehydrogenase (NADP+) (EC 1.2.1.30) from Mycobacterium marinum

28% id,
33% cov

SO1744: AMP-binding protein (NCBI ptt file)
is similar to:
PaperBLAST

CAR_NOCIO / Q6RKB1: Carboxylic acid reductase; CAR; ATP/NADPH-dependent carboxylic acid reductase; Aryl aldehyde oxidoreductase; EC 1.2.1.-; EC 1.2.1.30 from Nocardia iowensis
car / Q6RKB1: carboxylic acid reductase (EC 1.2.1.30) from Nocardia iowensis
Q6RKB1: aryl-aldehyde dehydrogenase (NADP+) (EC 1.2.1.30) from Nocardia iowensis

20% id,
44% cov

SO4245: amino-acid acetyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

ARG56_YEAST / Q01217: Protein ARG5,6, mitochondrial; EC 1.2.1.38; EC 2.7.2.8 from Saccharomyces cerevisiae

24% id,
37% cov

arg11 / GI|1204210: N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase; EC 1.2.1.38; EC 2.7.2.8 from Schizosaccharomyces pombe

24% id,
29% cov

SO0276: acetylglutamate kinase (NCBI ptt file)
is similar to:
PaperBLAST

ARG56_YEAST / Q01217: Protein ARG5,6, mitochondrial; EC 1.2.1.38; EC 2.7.2.8 from Saccharomyces cerevisiae

27% id,
29% cov

arg11 / GI|1204210: N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase; EC 1.2.1.38; EC 2.7.2.8 from Schizosaccharomyces pombe

26% id,
28% cov

SO0075: AMP-binding family protein (NCBI ptt file)
is similar to:
PaperBLAST

B2HN69: aryl-aldehyde dehydrogenase (NADP+) (EC 1.2.1.30) from Mycobacterium marinum

27% id,
25% cov

CAR_NOCIO / Q6RKB1: Carboxylic acid reductase; CAR; ATP/NADPH-dependent carboxylic acid reductase; Aryl aldehyde oxidoreductase; EC 1.2.1.-; EC 1.2.1.30 from Nocardia iowensis
car / Q6RKB1: carboxylic acid reductase (EC 1.2.1.30) from Nocardia iowensis
Q6RKB1: aryl-aldehyde dehydrogenase (NADP+) (EC 1.2.1.30) from Nocardia iowensis

28% id,
22% cov

SO2743: acetyl-coenzyme A synthetase (NCBI ptt file)
is similar to:
PaperBLAST

LYS2_YEAST / P07702: L-2-aminoadipate reductase; Alpha-aminoadipate reductase; Alpha-AR; L-aminoadipate-semialdehyde dehydrogenase; EC 1.2.1.31; EC 1.2.1.95 from Saccharomyces cerevisiae

23% id,
26% cov

Q8NJ21: L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31) from Kluyveromyces lactis

22% id,
23% cov

SO3664: long-chain-fatty-acid--CoA ligase (NCBI ptt file)
is similar to:
PaperBLAST

CAR_NOCIO / Q6RKB1: Carboxylic acid reductase; CAR; ATP/NADPH-dependent carboxylic acid reductase; Aryl aldehyde oxidoreductase; EC 1.2.1.-; EC 1.2.1.30 from Nocardia iowensis
car / Q6RKB1: carboxylic acid reductase (EC 1.2.1.30) from Nocardia iowensis
Q6RKB1: aryl-aldehyde dehydrogenase (NADP+) (EC 1.2.1.30) from Nocardia iowensis

27% id,
20% cov

B2HN69: aryl-aldehyde dehydrogenase (NADP+) (EC 1.2.1.30) from Mycobacterium marinum

25% id,
21% cov

SO2581: long-chain-fatty-acid--CoA ligase (NCBI ptt file)
is similar to:
PaperBLAST

CAR_NOCIO / Q6RKB1: Carboxylic acid reductase; CAR; ATP/NADPH-dependent carboxylic acid reductase; Aryl aldehyde oxidoreductase; EC 1.2.1.-; EC 1.2.1.30 from Nocardia iowensis
car / Q6RKB1: carboxylic acid reductase (EC 1.2.1.30) from Nocardia iowensis
Q6RKB1: aryl-aldehyde dehydrogenase (NADP+) (EC 1.2.1.30) from Nocardia iowensis

29% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 24 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory