Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 14 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO1122: gamma-glutamyl phosphate reductase (NCBI ptt file)
is similar to:

PROA_ECOLI / P07004: Gamma-glutamyl phosphate reductase; GPR; Glutamate-5-semialdehyde dehydrogenase; Glutamyl-gamma-semialdehyde dehydrogenase; GSA dehydrogenase; EC from Escherichia coli
ProA / b0243: glutamate-5-semialdehyde dehydrogenase (EC from Escherichia coli
proA / P07004: glutamate-5-semialdehyde dehydrogenase (EC from Escherichia coli

59% id,
100% cov

A7Y114: glutamate-5-semialdehyde dehydrogenase (EC from Halobacillus halophilus

45% id,
95% cov

Echvi_2633: gamma-glutamylphosphate reductase (EC from Echinicola vietnamensis

39% id,
98% cov


SO1121: glutamate 5-kinase (NCBI ptt file)
is similar to:

P5CS1 / P54887: δ1-pyrroline-5-carboxylate synthetase (EC; EC from Arabidopsis thaliana

35% id,
41% cov

P5CS1_ORYSJ / O04226: Delta-1-pyrroline-5-carboxylate synthase 1; OsP5CS1; EC; EC from Oryza sativa

36% id,
39% cov

P5CS2_ORYSJ / Q941T1: Delta-1-pyrroline-5-carboxylate synthase 2; OsP5CS2; EC; EC from Oryza sativa
Q941T1: glutamate-5-semialdehyde dehydrogenase (EC from Oryza sativa

37% id,
37% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory