Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 11 curated entries in PaperBLAST's database that match '1.3.1.12' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO1362: chorismate mutase/prephenate dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

TyrA / b2600: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli
tyrA / P07023: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli

57% id,
99% cov

P43902: prephenate dehydrogenase (EC 1.3.1.12) from Haemophilus influenzae

53% id,
98% cov

J9XQS6: prephenate dehydrogenase (EC 1.3.1.12) from uncultured bacterium

33% id,
89% cov

SO1367: chorismate mutase/prephenate dehydratase (NCBI ptt file)
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus

29% id,
57% cov

SO1647: glutathione-regulated potassium-efflux system protein KefB, putative (NCBI ptt file)
is similar to:
PaperBLAST

P43902: prephenate dehydrogenase (EC 1.3.1.12) from Haemophilus influenzae

29% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory