Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 8 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO1362: chorismate mutase/prephenate dehydrogenase (NCBI ptt file)
is similar to:

A0A101IGG2: prephenate dehydrogenase (NADP+) (EC from Methanothrix harundinacea

32% id,
90% cov

A8AAX2: prephenate dehydrogenase (NADP+) (EC from Ignicoccus hospitalis

22% id,
99% cov

BT3933: prephenate dehydrogenase (EC from Bacteroides thetaiotaomicron

22% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory