Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 6 curated entries in PaperBLAST's database that match '1.3.1.13' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO1362: chorismate mutase/prephenate dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

A8AAX2: prephenate dehydrogenase (NADP+) (EC 1.3.1.13) from Ignicoccus hospitalis

22% id,
99% cov

BT3933: prephenate dehydrogenase (EC 1.3.1.13) from Bacteroides thetaiotaomicron

22% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory