Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 41 curated entries in PaperBLAST's database that match '1.3.3.6' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO1897: isovaleryl-CoA dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

30% id,
87% cov

SO1679: acyl-CoA dehydrogenase family protein (NCBI ptt file)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

24% id,
86% cov

SO2395: acyl-CoA dehydrogenase family protein (NCBI ptt file)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

25% id,
77% cov

SO2536: oxidoreductase, acyl-CoA dehydrogenase family (NCBI ptt file)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

22% id,
76% cov

SO2768: acyl-CoA dehydrogenase family protein (NCBI ptt file)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

25% id,
62% cov

SO0471: hypothetical dioxygenase (NCBI ptt file)
is similar to:
PaperBLAST

fabX / O25465: decanoate oxidase (EC 1.3.3.6; EC 5.3.3.14) from Helicobacter pylori

28% id,
48% cov

SO2492: oxidoreductase, acyl-CoA dehydrogenase family (NCBI ptt file)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

27% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory