Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 23 curated entries in PaperBLAST's database that match '1.4.3.3'.

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO0007: ribosomal protein L34 (NCBI ptt file)
is similar to:
PaperBLAST

P80340: D-amino-acid oxidase (EC 1.4.3.3) from Rhodotorula toruloides

69% id,
86% cov

SO0978: FAD-dependent glycerol-3-phosphate dehydrogenase, family protein (NCBI ptt file)
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

39% id,
12% cov

SO2771: 2-hydroxy-3-oxopropionate reductase (NCBI ptt file)
is similar to:
PaperBLAST

Q6R4Q9: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

53% id,
9% cov

Q99042: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

53% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory