Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 26 curated entries in PaperBLAST's database that match '1.4.4.2' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO0781: glycine cleavage system P protein (NCBI ptt file) is similar to:	PaperBLAST
BWI76_RS23870: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Klebsiella michiganensis	69% id, 100% cov
GCSP_ECOLI / P33195: Glycine dehydrogenase (decarboxylating); Glycine cleavage system P-protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Escherichia coli GcvP / b2903: glycine decarboxylase (EC 1.4.4.2) from Escherichia coli gcvP: glycine dehydrogenase [decarboxylating]; EC 1.4.4.2 from Escherichia coli gcvP / P33195: glycine decarboxylase (EC 1.4.4.2) from Escherichia coli	69% id, 100% cov
BPHYT_RS19330: glycine cleavage system P protein (EC 1.4.4.2) from Burkholderia phytofirmans	60% id, 99% cov
Pf6N2E2_5558: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens	60% id, 99% cov
PfGW456L13_1868: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens	59% id, 100% cov
AO353_03500: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens	59% id, 100% cov
PS417_22360: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas simiae	58% id, 100% cov
GCSP1_ARATH / Q94B78: Glycine dehydrogenase (decarboxylating) 1, mitochondrial; Glycine cleavage system P protein 1; Glycine decarboxylase 1; Glycine decarboxylase P-protein 1; AtGLDP1; Glycine dehydrogenase (aminomethyl-transferring) 1; EC 1.4.4.2 from Arabidopsis thaliana	55% id, 92% cov
GCSPA_FLAPR / P49361: Glycine dehydrogenase (decarboxylating) A, mitochondrial; Glycine cleavage system P protein A; Glycine decarboxylase A; Glycine dehydrogenase (aminomethyl-transferring) A; EC 1.4.4.2 from Flaveria pringlei	54% id, 93% cov
GCSP_HUMAN / P23378: Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Homo sapiens GLDC / P23378: Glycine dehydrogenase [decarboxylating], mitochondrial (EC 1.4.4.2) from Homo sapiens P23378: glycine cleavage system (subunit 4/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens	54% id, 93% cov
GCSP_CHICK / P15505: Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Gallus gallus GLDC / P15505: glycine decarboxylase subunit (EC 1.4.4.2) from Gallus gallus P15505: glycine cleavage system (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Gallus gallus	53% id, 94% cov
GCSP2_ARATH / O80988: Glycine dehydrogenase (decarboxylating) 2, mitochondrial; Glycine cleavage system P protein 2; Glycine decarboxylase 2; Glycine decarboxylase P-protein 2; AtGLDP2; Glycine dehydrogenase (aminomethyl-transferring) 2; EC 1.4.4.2 from Arabidopsis thaliana	54% id, 92% cov
GCSP_PEA / P26969: Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Pisum sativum	55% id, 91% cov
A9PL02: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Populus tremuloides	54% id, 91% cov
GCSP_SCHPO / Q09785: Putative glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Schizosaccharomyces pombe	51% id, 94% cov
GCSP_YEAST / P49095: Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine decarboxylase complex subunit P; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Saccharomyces cerevisiae	50% id, 93% cov
D4A5Q9: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Rattus norvegicus	44% id, 80% cov
D4A5Q9: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Rattus norvegicus	46% id, 27% cov
More...

SO0780: glycine cleavage system H protein (NCBI ptt file) is similar to:	PaperBLAST
P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana	47% id, 78% cov
P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens	47% id, 68% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

792951-793400 (frame +3) on 139 is similar to:	PaperBLAST
P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana Also see hits to annotated proteins above	44% id, 88% cov
P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens Also see hits to annotated proteins above	44% id, 76% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory