Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 26 curated entries in PaperBLAST's database that match '1.4.4.2' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO0781: glycine cleavage system P protein (NCBI ptt file)
is similar to:
PaperBLAST

BWI76_RS23870: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Klebsiella michiganensis

69% id,
100% cov

GCSP_ECOLI / P33195: Glycine dehydrogenase (decarboxylating); Glycine cleavage system P-protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Escherichia coli
GcvP / b2903: glycine decarboxylase (EC 1.4.4.2) from Escherichia coli
gcvP: glycine dehydrogenase [decarboxylating]; EC 1.4.4.2 from Escherichia coli
gcvP / P33195: glycine decarboxylase (EC 1.4.4.2) from Escherichia coli

69% id,
100% cov

BPHYT_RS19330: glycine cleavage system P protein (EC 1.4.4.2) from Burkholderia phytofirmans

60% id,
99% cov

More...

SO0780: glycine cleavage system H protein (NCBI ptt file)
is similar to:
PaperBLAST

P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana

47% id,
78% cov

P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

47% id,
68% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

792951-793400 (frame +3) on 139
is similar to:
PaperBLAST

P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana
Also see hits to annotated proteins above

44% id,
88% cov

P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens
Also see hits to annotated proteins above

44% id,
76% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory