Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 35 curated entries in PaperBLAST's database that match '1.5.1.1'.

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO1792: methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase (NCBI ptt file)
is similar to:
PaperBLAST

MTDC_DROME / Q04448: Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial; DNMDMC; EC 1.5.1.15; EC 3.5.4.9 from Drosophila melanogaster

49% id,
96% cov

Q46A53: methylenetetrahydrofolate dehydrogenase (NAD+) (EC 1.5.1.15); methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) from Methanosarcina barkeri

43% id,
97% cov

MTD2L_RAT / D3ZUA0: Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase 2, mitochondrial; NADP-dependent methylenetetrahydrofolate dehydrogenase 2-like protein; MTHFD2-like; EC 1.5.1.15; EC 1.5.1.5; EC 3.5.4.9 from Rattus norvegicus

43% id,
87% cov

More...

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase, putative (NCBI ptt file)
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

47% id,
78% cov

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

31% id,
85% cov

SO4480: aldehyde dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

30% id,
81% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

30% id,
32% cov

SO3496: aldehyde dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

27% id,
87% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

28% id,
34% cov

SO1275: succinate-semialdehyde dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

26% id,
84% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

28% id,
34% cov

SO1678: methylmalonate-semialdehyde dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

26% id,
73% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

28% id,
31% cov

SO4054: 5,10-methylenetetrahydrofolate reductase (NCBI ptt file)
is similar to:
PaperBLAST

Q9WU20: methylenetetrahydrofolate dehydrogenase (NAD+) (EC 1.5.1.15); methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Mus musculus

33% id,
43% cov

SO0619: succinylglutamic semialdehyde dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

30% id,
33% cov

SO3763: spermine/spermidine synthase family protein (NCBI ptt file)
is similar to:
PaperBLAST

Q6RXX2: saccharopine dehydrogenase (NADP+, L-glutamate-forming) (EC 1.5.1.10) from Cryptococcus neoformans

25% id,
37% cov

SO3683: coniferyl aldehyde dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

25% id,
32% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4207712-4208692 (frame -3) on 139
is similar to:
PaperBLAST

Q9WU20: methylenetetrahydrofolate dehydrogenase (NAD+) (EC 1.5.1.15); methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Mus musculus
Also see hits to annotated proteins above

31% id,
50% cov

3651263-3652144 (frame +2) on 139
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli
Also see hits to annotated proteins above

25% id,
23% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory