Searching in Shewanella oneidensis MR-1 (MR1)
Found 2 curated entries in PaperBLAST's database that match '1.5.1.12' as complete word(s).
These curated entries have 2 distinct sequences.
Running ublast with E ≤ 0.01
Found 7 relevant proteins in Shewanella oneidensis MR-1, or try another query
| SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase, putative (NCBI ptt file) is similar to: | PaperBLAST |
putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli | 47% id, 78% cov |
prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans | 31% id, 85% cov |
| SO4480: aldehyde dehydrogenase (NCBI ptt file) is similar to: | PaperBLAST |
prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans | 30% id, 81% cov |
putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli | 30% id, 32% cov |
| SO3496: aldehyde dehydrogenase (NCBI ptt file) is similar to: | PaperBLAST |
prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans | 27% id, 87% cov |
putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli | 28% id, 34% cov |
| SO1275: succinate-semialdehyde dehydrogenase (NCBI ptt file) is similar to: | PaperBLAST |
prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans | 26% id, 84% cov |
putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli | 28% id, 34% cov |
| SO1678: methylmalonate-semialdehyde dehydrogenase (NCBI ptt file) is similar to: | PaperBLAST |
prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans | 26% id, 73% cov |
putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli | 28% id, 31% cov |
| SO0619: succinylglutamic semialdehyde dehydrogenase (NCBI ptt file) is similar to: | PaperBLAST |
putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli | 30% id, 33% cov |
| SO3683: coniferyl aldehyde dehydrogenase (NCBI ptt file) is similar to: | PaperBLAST |
putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli | 25% id, 32% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 9 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 3651263-3652144 (frame +2) on 139 is similar to: | PaperBLAST |
putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli | 25% id, 23% cov |
Lawrence Berkeley National Laboratory