Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 4 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO0772: oxidoreductase, short chain dehydrogenase/reductase family (NCBI ptt file)
is similar to:

FOLM_ECOLI / P0AFS3: Dihydromonapterin reductase; H(2)-MPt reductase; Dihydrofolate reductase; DHFR; EC; EC from Escherichia coli
YdgB / b1606: dihydromonapterin reductase (EC; EC from Escherichia coli
folM / P0AFS3: dihydromonapterin reductase (EC; EC from Escherichia coli
P0AFS3: dihydromonapterin reductase (EC from Escherichia coli

54% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory