Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 48 curated entries in PaperBLAST's database that match '2.1.3.3' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO0277: ornithine carbamoyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

OTC_MORAB / Q9K4Y9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Moritella abyssi

63% id,
100% cov

OTCA_PYRFU / Q51742: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pyrococcus furiosus
Q51742: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus furiosus

45% id,
97% cov

O93656: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus abyssi

44% id,
96% cov

More...

SO1301: aspartate carbamoyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

OTCA_PYRFU / Q51742: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pyrococcus furiosus
Q51742: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus furiosus

32% id,
97% cov

O93656: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus abyssi

32% id,
97% cov

OTCC_HALSA / Q48296: Ornithine carbamoyltransferase, catabolic; cOTCase; EC 2.1.3.3 from Halobacterium salinarum
arcB / Q48296: ArcB (EC 2.1.3.3) from Halobacterium salinarum
Q48296: ornithine carbamoyltransferase (EC 2.1.3.3) from Halobacterium salinarum

29% id,
97% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory