Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 35 curated entries in PaperBLAST's database that match '2.3.1.1' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO4245: amino-acid acetyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

ARGA_ECOLI / P0A6C5: Amino-acid acetyltransferase; N-acetylglutamate synthase; AGS; NAGS; EC 2.3.1.1 from Escherichia coli
ArgA / b2818: N-acetylglutamate synthase (EC 2.3.1.1) from Escherichia coli
argA / P0A6C5: N-acetylglutamate synthase (EC 2.3.1.1) from Escherichia coli

66% id,
99% cov

P22567: amino-acid N-acetyltransferase (EC 2.3.1.1) from Pseudomonas aeruginosa

49% id,
100% cov

C4NFG1: amino-acid N-acetyltransferase (EC 2.3.1.1) from Solanum lycopersicum

38% id,
42% cov

More...

SO0276: acetylglutamate kinase (NCBI ptt file)
is similar to:
PaperBLAST

Q87EL2: amino-acid N-acetyltransferase (EC 2.3.1.1) from Xylella fastidiosa

28% id,
59% cov

Q0ASS9: amino-acid N-acetyltransferase (EC 2.3.1.1); acetylglutamate kinase (EC 2.7.2.8) from Maricaulis maris

32% id,
48% cov

N515DRAFT_3768: N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) from Dyella japonica

31% id,
49% cov

SO0877: acetyltransferase, GNAT family (NCBI ptt file)
is similar to:
PaperBLAST

C4NFG1: amino-acid N-acetyltransferase (EC 2.3.1.1) from Solanum lycopersicum

35% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

281482-282312 (frame +1) on 139
is similar to:
PaperBLAST

Q87EL2: amino-acid N-acetyltransferase (EC 2.3.1.1) from Xylella fastidiosa
Also see hits to annotated proteins above

28% id,
63% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory