Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 34 curated entries in PaperBLAST's database that match '2.3.3.5' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO0344: methylcitrate synthase (NCBI ptt file) is similar to:	PaperBLAST
PRPC_SHEON / Q8EJW2: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Shewanella oneidensis SO0344: 2-methylcitrate synthase (EC 2.3.3.5) from Shewanella oneidensis	100% id, 100% cov
Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens	74% id, 100% cov
Q9I5E3: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas aeruginosa	73% id, 100% cov
Q9KSC1: 2-methylcitrate synthase (EC 2.3.3.5) from Vibrio cholerae	69% id, 100% cov
PRPC_CUPNE / Q937N9: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Cupriavidus necator Q937N9: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus metallidurans	53% id, 100% cov
Q8X694: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	54% id, 96% cov
PRPC_ECOLI / P31660: 2-methylcitrate synthase; 2-MCS; MCS; (2S,3S)-2-methylcitrate synthase; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Escherichia coli YahS / b0333: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli prpC / GB\|AP_000985.1: 2-methylcitrate synthase; EC 2.3.3.5 from Escherichia coli prpC / P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	54% id, 96% cov
PRPC_SALTY / Q56063: 2-methylcitrate synthase; 2-MCS; mcs; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Salmonella typhimurium prpC / Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella typhimurium Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella enterica	53% id, 96% cov
Q2Z1A8: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus necator	54% id, 93% cov
PRPC1_CORGL / Q8NSH7: 2-methylcitrate synthase 1; 2-MCS; MCS; Citrate synthase 1; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSH7: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	41% id, 100% cov
P45858: citrate synthase (unknown stereospecificity) (EC 2.3.3.16); 2-methylcitrate synthase (EC 2.3.3.5) from Bacillus subtilis	41% id, 98% cov
PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium	41% id, 98% cov
PRPC2_CORGL / Q8NSL1: 2-methylcitrate synthase 2; 2-MCS; MCS; Citrate synthase 2; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSL1: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	40% id, 98% cov
PRPC_MYCTE / H8F0D7: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; CS; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis PRPC_MYCTU / I6Y9Q3: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis	42% id, 93% cov
PRPC_FUSSL / C7C435: 2-methylcitrate synthase, mitochondrial; Methylcitrate synthase; (2S,3S)-2-methylcitrate synthase; Citrate synthase 2; EC 2.3.3.5; EC 2.3.3.16 from Fusarium solani	25% id, 81% cov
PRPC_YARLI / Q6C793: 2-methylcitrate synthase, mitochondrial; Methylcitrate synthase; (2S,3S)-2-methylcitrate synthase; Citrate synthase 2; EC 2.3.3.5; EC 2.3.3.16 from Yarrowia lipolytica	26% id, 78% cov
PRPC_EMENI / Q9TEM3: 2-methylcitrate synthase, mitochondrial; Methylcitrate synthase; (2S,3S)-2-methylcitrate synthase; Citrate synthase 2; EC 2.3.3.5; EC 2.3.3.16 from Emericella nidulans mcsA / GI\|5763968: methylcitrate synthase; EC 2.3.3.5 from Emericella nidulans	25% id, 61% cov
PRPC_ASPFC / B0YD89: 2-methylcitrate synthase, mitochondrial; Methylcitrate synthase; (2S,3S)-2-methylcitrate synthase; Citrate synthase 2; EC 2.3.3.5; EC 2.3.3.16 from Aspergillus fumigatus PRPC_ASPFM / Q50I20: 2-methylcitrate synthase, mitochondrial; Methylcitrate synthase; (2S,3S)-2-methylcitrate synthase; Citrate synthase 1; EC 2.3.3.5; EC 2.3.3.16 from Aspergillus fumigatus mcsA / GI\|63028051: methylcitrate synthase; EC 2.3.3.5 from Aspergillus fumigatus Q50I20: 2-methylcitrate synthase (EC 2.3.3.5) from Aspergillus fumigatus	24% id, 60% cov
More...

SO1926: citrate synthase (NCBI ptt file) is similar to:	PaperBLAST
Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens	34% id, 97% cov
PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium	32% id, 98% cov
Q9I5E3: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas aeruginosa	31% id, 97% cov
P45858: citrate synthase (unknown stereospecificity) (EC 2.3.3.16); 2-methylcitrate synthase (EC 2.3.3.5) from Bacillus subtilis	31% id, 97% cov
PRPC2_CORGL / Q8NSL1: 2-methylcitrate synthase 2; 2-MCS; MCS; Citrate synthase 2; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSL1: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	30% id, 97% cov
PRPC_CUPNE / Q937N9: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Cupriavidus necator Q937N9: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus metallidurans	31% id, 93% cov
PRPC1_CORGL / Q8NSH7: 2-methylcitrate synthase 1; 2-MCS; MCS; Citrate synthase 1; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSH7: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	30% id, 98% cov
PRPC_SHEON / Q8EJW2: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Shewanella oneidensis SO0344: 2-methylcitrate synthase (EC 2.3.3.5) from Shewanella oneidensis	30% id, 97% cov
Q2Z1A8: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus necator	32% id, 90% cov
PRPC_ECOLI / P31660: 2-methylcitrate synthase; 2-MCS; MCS; (2S,3S)-2-methylcitrate synthase; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Escherichia coli YahS / b0333: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli prpC / GB\|AP_000985.1: 2-methylcitrate synthase; EC 2.3.3.5 from Escherichia coli prpC / P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	31% id, 91% cov
Q8X694: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	31% id, 91% cov
PRPC_SALTY / Q56063: 2-methylcitrate synthase; 2-MCS; mcs; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Salmonella typhimurium prpC / Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella typhimurium Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella enterica	31% id, 91% cov
PRPC_MYCTE / H8F0D7: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; CS; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis PRPC_MYCTU / I6Y9Q3: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis	31% id, 89% cov
Q9KSC1: 2-methylcitrate synthase (EC 2.3.3.5) from Vibrio cholerae	29% id, 92% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory