Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 197 curated entries in PaperBLAST's database that match '2.4.2.1'.

These curated entries have 142 distinct sequences.

Running ublast with E ≤ 0.01

Found 18 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO4255: orotate phosphoribosyltransferase (NCBI ptt file)
is similar to:		 PaperBLAST

PYRE_SALTY / P08870: Orotate phosphoribosyltransferase; OPRT; OPRTase; EC 2.4.2.10 from Salmonella typhimurium

 80% id,
100% cov

PYRE_ECOLI / P0A7E3: Orotate phosphoribosyltransferase; OPRT; OPRTase; EC 2.4.2.10 from Escherichia coli
PyrE / b3642: orotate phosphoribosyltransferase (EC 2.4.2.10) from Escherichia coli
pyrE / P0A7E3: orotate phosphoribosyltransferase (EC 2.4.2.10) from Escherichia coli

 79% id,
100% cov

PYRE_YEAST / P13298: Orotate phosphoribosyltransferase 1; OPRT 1; OPRTase 1; EC 2.4.2.10 from Saccharomyces cerevisiae
URA5 / P13298: orotate phosphoribosyltransferase (EC 2.4.2.10) from Saccharomyces cerevisiae
P13298: orotate phosphoribosyltransferase (EC 2.4.2.10) from Saccharomyces cerevisiae

 48% id,
98% cov

More...

SO3064: amidophosphoribosyltransferase (NCBI ptt file)
is similar to:		 PaperBLAST

PUR1_ECOLI / P0AG16: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; GPATase; EC 2.4.2.14 from Escherichia coli
Ade / b2312: amidophosphoribosyltransferase (EC 2.4.2.14) from Escherichia coli
purF / P0AG16: amidophosphoribosyltransferase (EC 2.4.2.14) from Escherichia coli

 74% id,
100% cov

PUR1_YEAST / P04046: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; EC 2.4.2.14 from Saccharomyces cerevisiae
ADE4 / P04046: phosphoribosylpyrophosphate amidotransferase (EC 2.4.2.14) from Saccharomyces cerevisiae

 50% id,
99% cov

ade4 / RF|NP_594961.1: amidophosphoribosyltransferase Ade4; EC 2.4.2.14 from Schizosaccharomyces pombe

 50% id,
98% cov

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SO1221: purine nucleoside phosphorylase (NCBI ptt file)
is similar to:		 PaperBLAST

DEOD_SALTY / Q8ZJV7: Purine nucleoside phosphorylase DeoD-type; PNP; EC 2.4.2.1 from Salmonella typhimurium

 71% id,
98% cov

DEOD_ECOLI / P0ABP8: Purine nucleoside phosphorylase DeoD-type; PNP; EC 2.4.2.1 from Escherichia coli
Pup / b4384: purine nucleoside phosphorylase (EC 2.4.2.15; EC 2.4.2.1) from Escherichia coli
deoD / RF|NP_418801: purine nucleoside phosphorylase deoD-type; EC 2.4.2.1 from Escherichia coli
deoD / P0ABP8: purine nucleoside phosphorylase (EC 2.4.2.15; EC 2.4.2.1) from Escherichia coli

 69% id,
98% cov

deoD: purine nucleoside phosphorylase; EC 2.4.2.1 from Bacillus anthracis

 64% id,
98% cov

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SO2074: ATP phosphoribosyltransferase (NCBI ptt file)
is similar to:		 PaperBLAST

HIS1_ECOLI / P60757: ATP phosphoribosyltransferase; ATP-PRT; ATP-PRTase; EC 2.4.2.17 from Escherichia coli
HisG / b2019: ATP phosphoribosyltransferase (EC 2.4.2.17) from Escherichia coli
hisG / P60757: ATP phosphoribosyltransferase (EC 2.4.2.17) from Escherichia coli

 68% id,
100% cov

HIS1_SALTY / P00499: ATP phosphoribosyltransferase; ATP-PRT; ATP-PRTase; EC 2.4.2.17 from Salmonella typhimurium

 66% id,
100% cov

Q9PM78: ATP phosphoribosyltransferase (EC 2.4.2.17) from Campylobacter jejuni
Q5HSJ4: ATP phosphoribosyltransferase (EC 2.4.2.17) from Campylobacter jejuni

 65% id,
100% cov

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SO0092: purine nucleoside phosphorylase (NCBI ptt file)
is similar to:		 PaperBLAST

DEOD_SALTY / Q8ZJV7: Purine nucleoside phosphorylase DeoD-type; PNP; EC 2.4.2.1 from Salmonella typhimurium

 57% id,
98% cov

DEOD_ECOLI / P0ABP8: Purine nucleoside phosphorylase DeoD-type; PNP; EC 2.4.2.1 from Escherichia coli
Pup / b4384: purine nucleoside phosphorylase (EC 2.4.2.15; EC 2.4.2.1) from Escherichia coli
deoD / RF|NP_418801: purine nucleoside phosphorylase deoD-type; EC 2.4.2.1 from Escherichia coli
deoD / P0ABP8: purine nucleoside phosphorylase (EC 2.4.2.15; EC 2.4.2.1) from Escherichia coli

 56% id,
98% cov

C8CPR9: purine-nucleoside phosphorylase (EC 2.4.2.1) from Pseudoalteromonas sp.

 53% id,
100% cov

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SO1981: conserved hypothetical protein (NCBI ptt file)
is similar to:		 PaperBLAST

NAMPT_ACIAD / Q6FDK2: Nicotinamide phosphoribosyltransferase; NAmPRTase; NMPRT; Nampt; EC 2.4.2.12 from Acinetobacter baylyi

 56% id,
97% cov

nadV / Q9APM3: nicotinamide phosphoribosyltransferase (EC 2.4.2.12) from Haemophilus ducreyi

 47% id,
97% cov

NAMPT_RAT / Q80Z29: Nicotinamide phosphoribosyltransferase; NAmPRTase; Nampt; Pre-B-cell colony-enhancing factor 1 homolog; PBEF; Visfatin; EC 2.4.2.12 from Rattus norvegicus

 32% id,
96% cov

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SO3578: conserved hypothetical protein TIGR00726 (NCBI ptt file)
is similar to:		 PaperBLAST

PURNU_ECOLI / P33644: Purine nucleoside phosphorylase YfiH; Adenosine deaminase YfiH; Polyphenol oxidase YfiH; S-methyl-5'-thioadenosine phosphorylase YfiH; EC 2.4.2.1; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.28 from Escherichia coli
yfiH / P33644: purine nucleoside phosphorylase YfiH (EC 2.4.2.1; EC 2.4.2.28; EC 3.5.4.4; EC 1.10.3.2) from Escherichia coli

 55% id,
98% cov

PURNU_GEOS3 / P84138: Purine nucleoside phosphorylase YlmD; Adenosine deaminase YlmD; S-methyl-5'-thioadenosine phosphorylase YlmD; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Geobacillus stearothermophilus

 35% id,
89% cov

PURNU_UNKP / Q1EIR0: Adenosine deaminase RL5; Laccase RL5; Multicopper oxidase RL5; Polyphenol oxidase; Purine nucleoside phosphorylase RL5; S-methyl-5'-thioadenosine phosphorylase RL5; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.1; EC 2.4.2.28 from Unknown prokaryotic

 31% id,
88% cov

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SO2719: purine nucleoside phosphorylase (NCBI ptt file)
is similar to:		 PaperBLAST

C8CPR9: purine-nucleoside phosphorylase (EC 2.4.2.1) from Pseudoalteromonas sp.

 55% id,
99% cov

DEOD_ECOLI / P0ABP8: Purine nucleoside phosphorylase DeoD-type; PNP; EC 2.4.2.1 from Escherichia coli
Pup / b4384: purine nucleoside phosphorylase (EC 2.4.2.15; EC 2.4.2.1) from Escherichia coli
deoD / RF|NP_418801: purine nucleoside phosphorylase deoD-type; EC 2.4.2.1 from Escherichia coli
deoD / P0ABP8: purine nucleoside phosphorylase (EC 2.4.2.15; EC 2.4.2.1) from Escherichia coli

 55% id,
97% cov

DEOD_SALTY / Q8ZJV7: Purine nucleoside phosphorylase DeoD-type; PNP; EC 2.4.2.1 from Salmonella typhimurium

 53% id,
97% cov

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SO3021: anthranilate phosphoribosyltransferase (NCBI ptt file)
is similar to:		 PaperBLAST

TRPD_THET8 / Q5SH88: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Thermus thermophilus
TRPD_THETH / P83827: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Thermus thermophilus

 43% id,
95% cov

TRPD_XANCP / Q8PD71: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Xanthomonas campestris

 40% id,
97% cov

TRPD2_NOSS1 / Q8YXQ9: Anthranilate phosphoribosyltransferase 2; EC 2.4.2.18 from Nostoc sp.

 40% id,
96% cov

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SO4467: conserved hypothetical protein (NCBI ptt file)
is similar to:		 PaperBLAST

PPNP_ECOLI / P0C037: Pyrimidine/purine nucleoside phosphorylase; Adenosine phosphorylase; Cytidine phosphorylase; Guanosine phosphorylase; Inosine phosphorylase; Thymidine phosphorylase; Uridine phosphorylase; Xanthosine phosphorylase; EC 2.4.2.1; EC 2.4.2.2 from Escherichia coli
PpnP / b0391: nucleoside phosphorylase PpnP (EC 2.4.2.15; EC 2.4.2.1; EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli
ppnP / P0C037: nucleoside phosphorylase PpnP (EC 2.4.2.15; EC 2.4.2.2; EC 2.4.2.1) from Escherichia coli

 40% id,
98% cov

SO1200: triosephosphate isomerase (NCBI ptt file)
is similar to:		 PaperBLAST

P00941: purine-nucleoside phosphorylase (EC 2.4.2.1) from Homo sapiens

 40% id,
98% cov

SO4133: uridine phosphorylase (NCBI ptt file)
is similar to:		 PaperBLAST

B9LS20: guanosine phosphorylase (EC 2.4.2.15) from Halorubrum lacusprofundi

 37% id,
100% cov

Q72IR2: purine-nucleoside phosphorylase (EC 2.4.2.1) from Thermus thermophilus

 30% id,
94% cov

PNPH_SACS2 / P50389: Purine nucleoside phosphorylase; PNP; 5'-methylthioadenosine phosphorylase I; MTA phosphorylase I; MTAPI; EC 2.4.2.1; EC 2.4.2.28 from Saccharolobus solfataricus

 35% id,
82% cov

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SO1219: phosphopentomutase (NCBI ptt file)
is similar to:		 PaperBLAST

A0A518Y5Z2: purine-nucleoside phosphorylase (EC 2.4.2.1) from Helicobacter pylori

 57% id,
63% cov

SO4297: uridine phosphorylase, putative (NCBI ptt file)
is similar to:		 PaperBLAST

B9LS20: guanosine phosphorylase (EC 2.4.2.15) from Halorubrum lacusprofundi

 36% id,
99% cov

Q72IR2: purine-nucleoside phosphorylase (EC 2.4.2.1) from Thermus thermophilus

 31% id,
98% cov

deoD: purine nucleoside phosphorylase; EC 2.4.2.1 from Bacillus anthracis

 34% id,
86% cov

More...

SO3020: glutamine amido-transferase (NCBI ptt file)
is similar to:		 PaperBLAST

TRPGD_ECOLI / P00904: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Escherichia coli
TrpD / b1263: anthranilate synthase subunit TrpD (EC 2.4.2.18; EC 4.1.3.27) from Escherichia coli
trpD / P00904: anthranilate synthase subunit TrpD (EC 2.4.2.18) from Escherichia coli

 55% id,
36% cov

TRPGD_SALTY / P00905: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Salmonella typhimurium

 55% id,
36% cov

SO0613: para-aminobenzoate synthase glutamine amidotransferase, component II (NCBI ptt file)
is similar to:		 PaperBLAST

TRPGD_SALTY / P00905: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Salmonella typhimurium

 41% id,
35% cov

TRPGD_ECOLI / P00904: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Escherichia coli
TrpD / b1263: anthranilate synthase subunit TrpD (EC 2.4.2.18; EC 4.1.3.27) from Escherichia coli
trpD / P00904: anthranilate synthase subunit TrpD (EC 2.4.2.18) from Escherichia coli

 40% id,
35% cov

SO4741: glucosamine--fructose-6-phosphate aminotransferase (isomerizing) (NCBI ptt file)
is similar to:		 PaperBLAST

PUR1_HUMAN / Q06203: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; GPAT; EC 2.4.2.14 from Homo sapiens
PPAT / Q06203: Amidophosphoribosyltransferase (EC 2.4.2.14) from Homo sapiens
Q06203: amidophosphoribosyltransferase (EC 2.4.2.14); pantetheine-phosphate adenylyltransferase (EC 2.7.7.3) from Homo sapiens

 28% id,
51% cov

PUR1_RAT / P35433: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; GPAT; EC 2.4.2.14 from Rattus norvegicus

 28% id,
50% cov

PUR1_CHICK / P28173: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; GPAT; EC 2.4.2.14 from Gallus gallus

 26% id,
50% cov

More...

SO0420.2: hypothetical nicotinate-nucleotide pyrophosphorylase (NCBI ptt file)
is similar to:		 PaperBLAST

NADC_SALTY / P30012: Nicotinate-nucleotide pyrophosphorylase [carboxylating]; Quinolinate phosphoribosyltransferase [decarboxylating]; QAPRTase; EC 2.4.2.19 from Salmonella typhimurium

 53% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 19 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

434294-435010 (frame -3) on 139
is similar to:		 PaperBLAST

NADC_SALTY / P30012: Nicotinate-nucleotide pyrophosphorylase [carboxylating]; Quinolinate phosphoribosyltransferase [decarboxylating]; QAPRTase; EC 2.4.2.19 from Salmonella typhimurium
Also see hits to annotated proteins above

 68% id,
78% cov

NADC_ECOLI / P30011: Nicotinate-nucleotide pyrophosphorylase [carboxylating]; Quinolinate phosphoribosyltransferase [decarboxylating]; QAPRTase; EC 2.4.2.19 from Escherichia coli
NadC / b0109: quinolinate phosphoribosyltransferase (decarboxylating) (EC 2.4.2.19) from Escherichia coli
nadC: nicotinate-nucleotide diphosphorylase, carboxylating; EC 2.4.2.19 from Escherichia coli
nadC / P30011: quinolinate phosphoribosyltransferase (decarboxylating) (EC 2.4.2.19) from Escherichia coli

 66% id,
78% cov

NADC_MYCTU / P9WJJ7: Nicotinate-nucleotide pyrophosphorylase [carboxylating]; Quinolinate phosphoribosyltransferase [decarboxylating]; QAPRTase; EC 2.4.2.19 from Mycobacterium tuberculosis
P9WJJ7: nicotinate-nucleotide diphosphorylase (carboxylating) (EC 2.4.2.19) from Mycobacterium tuberculosis

 46% id,
73% cov

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory