Searching in Shewanella oneidensis MR-1 (MR1)
Found 25 curated entries in PaperBLAST's database that match '2.4.2.2' as complete word(s).
These curated entries have 16 distinct sequences.
Running ublast with E ≤ 0.01
Found 7 relevant proteins in Shewanella oneidensis MR-1, or try another query
| SO4133: uridine phosphorylase (NCBI ptt file) is similar to: | PaperBLAST |
Udp / b3831: uridine phosphorylase (EC 2.4.2.2; EC 2.4.2.3) from Escherichia coli | 76% id, 99% cov |
TK1479 / Q5JJC1: uridine phosphorylase (EC 2.4.2.2) from Thermococcus kodakarensis | 44% id, 83% cov |
Q5XA29: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Streptococcus pyogenes | 37% id, 93% cov |
| SO1218: thymidine phosphorylase (NCBI ptt file) is similar to: | PaperBLAST |
Ttg / b4382: thymidine phosphorylase (EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli | 67% id, 100% cov |
A0A0E2M090: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Lacticaseibacillus paracasei | 43% id, 99% cov |
PDP_BACSU / P39142: Pyrimidine-nucleoside phosphorylase; PYNP; Py-NPase; EC 2.4.2.2 from Bacillus subtilis | 43% id, 97% cov |
| SO4467: conserved hypothetical protein (NCBI ptt file) is similar to: | PaperBLAST |
PPNP_ECOLI / P0C037: Pyrimidine/purine nucleoside phosphorylase; Adenosine phosphorylase; Cytidine phosphorylase; Guanosine phosphorylase; Inosine phosphorylase; Thymidine phosphorylase; Uridine phosphorylase; Xanthosine phosphorylase; EC 2.4.2.1; EC 2.4.2.2 from Escherichia coli | 40% id, 98% cov |
| SO4297: uridine phosphorylase, putative (NCBI ptt file) is similar to: | PaperBLAST |
Udp / b3831: uridine phosphorylase (EC 2.4.2.2; EC 2.4.2.3) from Escherichia coli | 34% id, 92% cov |
TK1479 / Q5JJC1: uridine phosphorylase (EC 2.4.2.2) from Thermococcus kodakarensis | 34% id, 86% cov |
Q5XA29: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Streptococcus pyogenes | 31% id, 93% cov |
| SO0092: purine nucleoside phosphorylase (NCBI ptt file) is similar to: | PaperBLAST |
TK1479 / Q5JJC1: uridine phosphorylase (EC 2.4.2.2) from Thermococcus kodakarensis | 34% id, 86% cov |
| SO1221: purine nucleoside phosphorylase (NCBI ptt file) is similar to: | PaperBLAST |
Udp / b3831: uridine phosphorylase (EC 2.4.2.2; EC 2.4.2.3) from Escherichia coli | 30% id, 94% cov |
| SO3021: anthranilate phosphoribosyltransferase (NCBI ptt file) is similar to: | PaperBLAST |
TYMP / P19971: thymidine phosphorylase monomer (EC 2.4.2.3; EC 2.4.2.2) from Homo sapiens | 26% id, 31% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 3132045-3133238 (frame +3) on 139 is similar to: | PaperBLAST |
TYMP / P19971: thymidine phosphorylase monomer (EC 2.4.2.3; EC 2.4.2.2) from Homo sapiens | 25% id, 38% cov |
Lawrence Berkeley National Laboratory