Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 65 curated entries in PaperBLAST's database that match '2.4.2.4'.

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO1218: thymidine phosphorylase (NCBI ptt file)
is similar to:
PaperBLAST

Q7CP66: thymidine phosphorylase (EC 2.4.2.4) from Salmonella enterica

68% id,
100% cov

Ttg / b4382: thymidine phosphorylase (EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli
deoA / GB|AAC77335.1: thymidine phosphorylase; EC 2.4.2.4 from Escherichia coli
P07650: thymidine phosphorylase (EC 2.4.2.4) from Escherichia coli

67% id,
100% cov

TYPH_HUMAN / P19971: Thymidine phosphorylase; TP; Gliostatin; Platelet-derived endothelial cell growth factor; PD-ECGF; TdRPase; EC 2.4.2.4 from Homo sapiens
P19971: thymidine phosphorylase (EC 2.4.2.4) from Homo sapiens

38% id,
91% cov

More...

SO4467: conserved hypothetical protein (NCBI ptt file)
is similar to:
PaperBLAST

PPNP_ECOLI / P0C037: Pyrimidine/purine nucleoside phosphorylase; Adenosine phosphorylase; Cytidine phosphorylase; Guanosine phosphorylase; Inosine phosphorylase; Thymidine phosphorylase; Uridine phosphorylase; Xanthosine phosphorylase; EC 2.4.2.1; EC 2.4.2.2; EC 2.4.2.15; EC 2.4.2.4; EC 2.4.2.3 from Escherichia coli
PpnP / b0391: nucleoside phosphorylase PpnP (EC 2.4.2.15; EC 2.4.2.1; EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli

40% id,
98% cov

SO4297: uridine phosphorylase, putative (NCBI ptt file)
is similar to:
PaperBLAST

PNPH_PLAF7 / Q8I3X4: Purine nucleoside phosphorylase; PfPNP; S-methyl-5'-thioinosine phosphorylase; EC 2.4.2.1; EC 2.4.2.44 from Plasmodium falciparum
PNPH_PLAFA / Q8T9Z7: Purine nucleoside phosphorylase; S-methyl-5'-thioinosine phosphorylase; EC 2.4.2.1; EC 2.4.2.44 from Plasmodium falciparum
PNP / Q8T9Z7: purine nucleoside phosphorylase monomer (EC 2.4.2.44; EC 2.4.2.1) from Plasmodium falciparum

31% id,
80% cov

SO4690: conserved hypothetical protein (NCBI ptt file)
is similar to:
PaperBLAST

ARNT_SALTY / O52327: Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase; 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Polymyxin resistance protein PmrK; Undecaprenyl phosphate-alpha-L-Ara4N transferase; EC 2.4.2.43 from Salmonella typhimurium
O52327: lipid IVA 4-amino-4-deoxy-L-arabinosyltransferase (EC 2.4.2.43) from Salmonella enterica

25% id,
92% cov

AAL34393.1: 4-amino-4-deoxy-L-arabinotransferase (ArnT) (EC 2.4.2.43) from

25% id,
92% cov

ABF11690.1: 4-amino-4-deoxy-L-arabinosyltransferase (ArnT;ArnTCm;Rmet_4828) (EC 2.4.2.43) from

27% id,
73% cov

More...

SO4133: uridine phosphorylase (NCBI ptt file)
is similar to:
PaperBLAST

PNPH_PLAF7 / Q8I3X4: Purine nucleoside phosphorylase; PfPNP; S-methyl-5'-thioinosine phosphorylase; EC 2.4.2.1; EC 2.4.2.44 from Plasmodium falciparum
PNPH_PLAFA / Q8T9Z7: Purine nucleoside phosphorylase; S-methyl-5'-thioinosine phosphorylase; EC 2.4.2.1; EC 2.4.2.44 from Plasmodium falciparum
PNP / Q8T9Z7: purine nucleoside phosphorylase monomer (EC 2.4.2.44; EC 2.4.2.1) from Plasmodium falciparum

29% id,
76% cov

SO3113: queuine tRNA-ribosyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

Q8THU2: tRNA-guanosine34 transglycosylase (subunit 2/2) (EC 2.4.2.29); tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Methanosarcina acetivorans

26% id,
68% cov

ATGT_HALVD / Q9C4M3: tRNA-guanine(15) transglycosylase; 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Archaeal tRNA-guanine transglycosylase; EC 2.4.2.48 from Haloferax volcanii
Q9C4M3: tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Haloferax volcanii

27% id,
66% cov

ATGT_PYRHO / O58843: tRNA-guanine(15) transglycosylase; 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Archaeal tRNA-guanine transglycosylase; EC 2.4.2.48 from Pyrococcus horikoshii
O58843: tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Pyrococcus horikoshii

27% id,
58% cov

More...

SO3021: anthranilate phosphoribosyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

TYPH_HUMAN / P19971: Thymidine phosphorylase; TP; Gliostatin; Platelet-derived endothelial cell growth factor; PD-ECGF; TdRPase; EC 2.4.2.4 from Homo sapiens
P19971: thymidine phosphorylase (EC 2.4.2.4) from Homo sapiens

26% id,
31% cov

SO3455: GTP pyrophosphokinase (NCBI ptt file)
is similar to:
PaperBLAST

Q99N42: thymidine phosphorylase (EC 2.4.2.4) from Mus musculus

32% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3132045-3133238 (frame +3) on 139
is similar to:
PaperBLAST

TYPH_HUMAN / P19971: Thymidine phosphorylase; TP; Gliostatin; Platelet-derived endothelial cell growth factor; PD-ECGF; TdRPase; EC 2.4.2.4 from Homo sapiens
P19971: thymidine phosphorylase (EC 2.4.2.4) from Homo sapiens
Also see hits to annotated proteins above

25% id,
38% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory