Searching in Shewanella oneidensis MR-1 (MR1)
Found 11 curated entries in PaperBLAST's database that match '2.4.2.4' as complete word(s).
These curated entries have 7 distinct sequences.
Running ublast with E ≤ 0.01
Found 4 relevant proteins in Shewanella oneidensis MR-1, or try another query
SO1218: thymidine phosphorylase (NCBI ptt file) is similar to: | PaperBLAST |
Q7CP66: thymidine phosphorylase (EC 2.4.2.4) from Salmonella enterica | 68% id, 100% cov |
Ttg / b4382: thymidine phosphorylase (EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli | 67% id, 100% cov |
TYPH_HUMAN / P19971: Thymidine phosphorylase; TP; Gliostatin; Platelet-derived endothelial cell growth factor; PD-ECGF; TdRPase; EC 2.4.2.4 from Homo sapiens | 38% id, 91% cov |
SO4467: conserved hypothetical protein (NCBI ptt file) is similar to: | PaperBLAST |
PpnP / b0391: nucleoside phosphorylase PpnP (EC 2.4.2.15; EC 2.4.2.1; EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli | 40% id, 98% cov |
SO3021: anthranilate phosphoribosyltransferase (NCBI ptt file) is similar to: | PaperBLAST |
TYPH_HUMAN / P19971: Thymidine phosphorylase; TP; Gliostatin; Platelet-derived endothelial cell growth factor; PD-ECGF; TdRPase; EC 2.4.2.4 from Homo sapiens | 26% id, 31% cov |
SO3455: GTP pyrophosphokinase (NCBI ptt file) is similar to: | PaperBLAST |
Q99N42: thymidine phosphorylase (EC 2.4.2.4) from Mus musculus | 32% id, 22% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
3132045-3133238 (frame +3) on 139 is similar to: | PaperBLAST |
TYPH_HUMAN / P19971: Thymidine phosphorylase; TP; Gliostatin; Platelet-derived endothelial cell growth factor; PD-ECGF; TdRPase; EC 2.4.2.4 from Homo sapiens | 25% id, 38% cov |
Lawrence Berkeley National Laboratory