Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 75 curated entries in PaperBLAST's database that match '2.6.1.42'.

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO2350: aspartate aminotransferase (NCBI ptt file) is similar to:	PaperBLAST
TyrB / b4054: tyrosine aminotransferase (EC 2.6.1.57; EC 2.6.1.6; EC 2.6.1.42; EC 2.6.1.1; EC 2.6.1.5; EC 2.6.1.27) from Escherichia coli	46% id, 100% cov

SO0340: branched-chain amino acid aminotransferase (NCBI ptt file) is similar to:	PaperBLAST
ILVE2_BACSU / P39576: Branched-chain-amino-acid aminotransferase 2; BCAT 2; Vegetative protein 85; VEG85; EC 2.6.1.42 from Bacillus subtilis ilvK / P39576: branched-chain amino acid aminotransferase (EC 2.6.1.42; EC 2.6.1.6) from Bacillus subtilis	44% id, 95% cov
A0A2Z4MEX9: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Brevibacillus brevis	43% id, 97% cov
ILVE1_BACSU / O31461: Branched-chain-amino-acid transaminase 1; BCAT 1; EC 2.6.1.42 from Bacillus subtilis ilvE / O31461: branched-chain amino acid aminotransferase (EC 2.6.1.6; EC 2.6.1.42) from Bacillus subtilis	42% id, 96% cov
ILVE_MYCS2 / A0R066: Branched-chain-amino-acid aminotransferase; BCAT; EC 2.6.1.42 from Mycolicibacterium smegmatis A0R066: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Mycolicibacterium smegmatis	38% id, 98% cov
ILVE_MYCTU / P9WQ75: Branched-chain-amino-acid aminotransferase; BCAT; EC 2.6.1.42 from Mycobacterium tuberculosis P9WQ75: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Mycobacterium tuberculosis	38% id, 96% cov
Q8DTW7: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Streptococcus mutans	37% id, 97% cov
Q5FTR3: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Gluconobacter oxydans	39% id, 91% cov
Q9RTX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Deinococcus radiodurans	36% id, 97% cov
RR42_RS25890: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Cupriavidus basilensis	38% id, 92% cov
A0A5Q8BPF5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Lacticaseibacillus paracasei	35% id, 97% cov
AO356_22970: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Pseudomonas fluorescens	35% id, 97% cov
Q0E9S8: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Helicobacter pylori	35% id, 97% cov
Q7BPX6: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Lactococcus lactis	35% id, 98% cov
O26004: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Helicobacter pylori	34% id, 97% cov
Q9LPM9: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Arabidopsis thaliana	35% id, 92% cov
Q93Y32: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Arabidopsis thaliana	35% id, 89% cov
Q9LE06: branched-chain-amino-acid transaminase (EC 2.6.1.42); methionine transaminase (EC 2.6.1.88) from Arabidopsis thaliana	32% id, 96% cov
BCAT2_ARATH / Q9M439: Branched-chain-amino-acid aminotransferase 2, chloroplastic; Atbcat-2; EC 2.6.1.42 from Arabidopsis thaliana Q9M439: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Arabidopsis thaliana	33% id, 93% cov
B6RFK8: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Nicotiana benthamiana	36% id, 83% cov
BCAT2_HUMLU / K7QHS5: Branched-chain amino acid aminotransferase 2, chloroplastic; HlBCAT2; EC 2.6.1.42 from Humulus lupulus	37% id, 80% cov
BCA2_YEAST / P47176: Branched-chain-amino-acid aminotransferase, cytosolic; BCAT; Protein TWT2; EC 2.6.1.42 from Saccharomyces cerevisiae P47176: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Saccharomyces cerevisiae	35% id, 84% cov
A0A0A0KG15: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Cucumis sativus	35% id, 80% cov
BCAT2_HUMAN / O15382: Branched-chain-amino-acid aminotransferase, mitochondrial; BCAT(m); Placental protein 18; PP18; EC 2.6.1.42 from Homo sapiens O15382: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Homo sapiens	34% id, 83% cov
Q70KX9: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Hordeum vulgare	34% id, 84% cov
BCAT3_ARATH / Q9M401: Branched-chain-amino-acid aminotransferase 3, chloroplastic; Atbcat-3; EC 2.6.1.42; EC 2.6.1.88 from Arabidopsis thaliana Q9M401: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Arabidopsis thaliana	35% id, 79% cov
GLOG_GLAL2 / S3DQP8: Branched-chain amino acid aminotransferase gloG; L-homotyrosine biosynthesis sub-cluster protein gloG; Pneumocandin biosynthesis cluster protein G; EC 2.6.1.42 from Glarea lozoyensis	31% id, 89% cov
A0A0A0LN48: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Cucumis sativus	33% id, 84% cov
BCAT1_HUMLU / K7QKH1: Branched-chain amino acid aminotransferase 1, mitochondrial; HlBCAT1; EC 2.6.1.42 from Humulus lupulus	33% id, 84% cov
Q9FYA6: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Arabidopsis thaliana	35% id, 80% cov
N515DRAFT_2015: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Dyella japonica	26% id, 99% cov
More...

SO2406: aspartate aminotransferase (NCBI ptt file) is similar to:	PaperBLAST
TyrB / b4054: tyrosine aminotransferase (EC 2.6.1.57; EC 2.6.1.6; EC 2.6.1.42; EC 2.6.1.1; EC 2.6.1.5; EC 2.6.1.27) from Escherichia coli	40% id, 100% cov

SO2615: 4-amino-4-deoxychorismate lyase (NCBI ptt file) is similar to:	PaperBLAST
ilvE / A6UWA0: branched-chain amino acid aminotransferase subunit (EC 2.6.1.6; EC 2.6.1.42) from Methanococcus aeolicus A6UWA0: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Methanococcus aeolicus	30% id, 89% cov

SO2282: transcriptional regulator, GntR family (NCBI ptt file) is similar to:	PaperBLAST
BWI76_RS24235: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Klebsiella michiganensis	27% id, 70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2395762-2397144 (frame -1) on 139 is similar to:	PaperBLAST
A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.	29% id, 71% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory