Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 34 curated entries in PaperBLAST's database that match '2.6.1.57' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO2350: aspartate aminotransferase (NCBI ptt file)
is similar to:
PaperBLAST

AspC / b0928: aspartate aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.5; EC 2.6.1.7; EC 2.6.1.3) from Escherichia coli

62% id,
100% cov

HP15_858: phenylalanine aminotransferase (EC 2.6.1.57) from Marinobacter adhaerens

49% id,
99% cov

TYRB_ECOLI / P04693: Aromatic-amino-acid aminotransferase; ARAT; AROAT; Beta-methylphenylalanine transaminase; EC 2.6.1.57; EC 2.6.1.107 from Escherichia coli
TyrB / b4054: tyrosine aminotransferase (EC 2.6.1.57; EC 2.6.1.6; EC 2.6.1.42; EC 2.6.1.1; EC 2.6.1.5; EC 2.6.1.27) from Escherichia coli
tyrB / GB|AAC77024.1: aromatic-amino-acid transaminase TyrB; EC 2.6.1.57 from Escherichia coli
tyrB / P04693: tyrosine aminotransferase (EC 2.6.1.57; EC 2.6.1.6; EC 2.6.1.1) from Escherichia coli

46% id,
100% cov

More...

SO2406: aspartate aminotransferase (NCBI ptt file)
is similar to:
PaperBLAST

HP15_858: phenylalanine aminotransferase (EC 2.6.1.57) from Marinobacter adhaerens

50% id,
99% cov

Psest_0779: tyrosine aminotransferase (EC 2.6.1.57) from Pseudomonas stutzeri

49% id,
99% cov

AspC / b0928: aspartate aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.5; EC 2.6.1.7; EC 2.6.1.3) from Escherichia coli

49% id,
100% cov

More...

SO2483: aspartate aminotransferase, putative (NCBI ptt file)
is similar to:
PaperBLAST

ARAT2_THELN / H3ZPU1: Aromatic-amino-acid aminotransferase 2; ARAT-II; AROAT; EC 2.6.1.57 from Thermococcus litoralis

29% id,
96% cov

O59096: aromatic-amino-acid transaminase (EC 2.6.1.57) from Pyrococcus horikoshii

29% id,
96% cov

bacF / P39643: 3-[(2S,5R)-5-hydroxy-7-oxabicyclo[4.1.0]heptan-2-yl]-2-oxopropanoate aminotransferase (EC 2.6.1.57) from Bacillus subtilis

27% id,
95% cov

More...

SO2072: histidinol-phosphate aminotransferase (NCBI ptt file)
is similar to:
PaperBLAST

BPHYT_RS14905: Aromatic-amino-acid transaminase (EC 2.6.1.57) from Burkholderia phytofirmans

30% id,
89% cov

SO1769: glutamate decarboxylase, putative (NCBI ptt file)
is similar to:
PaperBLAST

H7CE71: aromatic-amino-acid transaminase (EC 2.6.1.57) from Rosa hybrid

23% id,
80% cov

SO2282: transcriptional regulator, GntR family (NCBI ptt file)
is similar to:
PaperBLAST

ARO8_YEAST / P53090: Aromatic/aminoadipate aminotransferase 1; 2-aminoadipate aminotransferase; 2-aminoadipate transaminase; Alpha-aminoadipate aminotransferase; AadAT; Aromatic amino acid aminotransferase 1; Aromatic amino acid aminotransferase I; Aromatic amino acid-requiring protein 8; EC 2.6.1.39; EC 2.6.1.57 from Saccharomyces cerevisiae
P53090: 2-aminoadipate transaminase (EC 2.6.1.39); aromatic-amino-acid transaminase (EC 2.6.1.57) from Saccharomyces cerevisiae

24% id,
43% cov

ARO9_YEAST / P38840: Aromatic amino acid aminotransferase 2; Aromatic amino acid aminotransferase II; Aromatic amino acid-requiring protein 9; Kynurenine aminotransferase I; KAT I; EC 2.6.1.57; EC 2.6.1.7 from Saccharomyces cerevisiae
P38840: aromatic-amino-acid transaminase (EC 2.6.1.57) from Saccharomyces cerevisiae

21% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2395762-2397144 (frame -1) on 139
is similar to:
PaperBLAST

ARAT1_THELN / H3ZPL1: Aromatic-amino-acid aminotransferase 1; ARAT-I; AROAT; EC 2.6.1.57 from Thermococcus litoralis

27% id,
71% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory