Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 114 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 79 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO1656: ROK family protein (NCBI ptt file)
is similar to:

glcK / P54495: glucokinase (EC from Bacillus subtilis

33% id,
97% cov

glk / Q9X1I0: glucokinase subunit (EC from Thermotoga maritima

32% id,
95% cov

Q5RLG0: hexokinase (EC from Thermus caldophilus

31% id,
95% cov


SO3507: conserved hypothetical protein (NCBI ptt file)
is similar to:

Q96Y14: hexokinase (EC from Sulfurisphaera tokodaii

32% id,
80% cov

SO1389: ROK family protein (NCBI ptt file)
is similar to:

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC; EC; EC from Bacteroides fragilis

24% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory