Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 2 curated entries in PaperBLAST's database that match '2.7.1.13' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO4458: carbohydrate kinase, PfkB family (NCBI ptt file)
is similar to:
PaperBLAST

Q0K080: dehydrogluconokinase (EC 2.7.1.13); 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Cupriavidus necator

26% id,
89% cov

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

33% id,
37% cov

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

36% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory