Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 31 curated entries in PaperBLAST's database that match '2.7.1.15' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO0810: ribokinase (NCBI ptt file)
is similar to:
PaperBLAST

A0A0H2UL04: ribokinase (EC 2.7.1.15) from Vibrio cholerae

51% id,
97% cov

BWI76_RS00290: Ribokinase (EC 2.7.1.15) from Klebsiella michiganensis

49% id,
96% cov

RBSK_ECOLI / P0A9J6: Ribokinase; RK; EC 2.7.1.15 from Escherichia coli
RbsK / b3752: ribokinase (EC 2.7.1.15) from Escherichia coli
rbsK / P0A9J6: ribokinase (EC 2.7.1.15) from Escherichia coli

49% id,
96% cov

More...

SO3745: ADP-heptose synthase (NCBI ptt file)
is similar to:
PaperBLAST

RBSK_HUMAN / Q9H477: Ribokinase; RK; EC 2.7.1.15 from Homo sapiens
Q9H477: ribokinase (EC 2.7.1.15) from Homo sapiens

27% id,
92% cov

RBSK_YEAST / P25332: Ribokinase; RK; EC 2.7.1.15 from Saccharomyces cerevisiae

28% id,
27% cov

SO4458: carbohydrate kinase, PfkB family (NCBI ptt file)
is similar to:
PaperBLAST

SMc01103: Ribokinase (EC 2.7.1.15) from Sinorhizobium meliloti

23% id,
99% cov

P71913: ribokinase (EC 2.7.1.15) from Mycobacterium tuberculosis

26% id,
78% cov

RBSK_YEAST / P25332: Ribokinase; RK; EC 2.7.1.15 from Saccharomyces cerevisiae

28% id,
43% cov

More...

SO1150: ribose 5-phosphate isomerase (NCBI ptt file)
is similar to:
PaperBLAST

RBSKI_FRUSL / P83534: Bifunctional ribokinase/ribose-5-phosphate isomerase A; EC 2.7.1.15; EC 5.3.1.6 from Fructilactobacillus sanfranciscensis

34% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory