Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 13 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO0810: ribokinase (NCBI ptt file)
is similar to:

kdgK / Q9WXS2: 2-keto-3-deoxygluconate kinase (EC from Thermotoga maritima

23% id,
88% cov

SO4458: carbohydrate kinase, PfkB family (NCBI ptt file)
is similar to:

YhjI / b3526: 2-dehydro-3-deoxygluconokinase (EC; EC from Escherichia coli
kdgK / P37647: 2-dehydro-3-deoxygluconokinase (EC from Escherichia coli

39% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory