Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 37 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO1656: ROK family protein (NCBI ptt file)
is similar to:

Sama_2231: glucokinase (EC from Shewanella amazonensis

78% id,
100% cov

Sama_1405: glucokinase (EC from Shewanella amazonensis

66% id,
95% cov

GLK_BACSU / P54495: Glucokinase; Glucose kinase; EC from Bacillus subtilis
P54495: glucokinase (EC from Bacillus subtilis

33% id,
97% cov


SO1389: ROK family protein (NCBI ptt file)
is similar to:

glk: glucokinase; EC from Bacillus megaterium
O31392: glucokinase (EC from Bacillus megaterium

37% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory