Searching in Shewanella oneidensis MR-1 (MR1)
Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).
These curated entries have 13 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Shewanella oneidensis MR-1, or try another query
| SO3414: homoserine kinase (NCBI ptt file) is similar to: | PaperBLAST |
KHSE_ECOLI / P00547: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Escherichia coli | 55% id, 99% cov |
Echvi_2001: homoserine kinase (EC 2.7.1.39) from Echinicola vietnamensis | 37% id, 89% cov |
CA265_RS23470: homoserine kinase (EC 2.7.1.39) from Pedobacter sp. | 34% id, 89% cov |
| SO0286: shikimate kinase (NCBI ptt file) is similar to: | PaperBLAST |
thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris | 33% id, 86% cov |
| SO3836: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (NCBI ptt file) is similar to: | PaperBLAST |
CA265_RS23470: homoserine kinase (EC 2.7.1.39) from Pedobacter sp. | 26% id, 57% cov |
KHSE_ECOLI / P00547: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Escherichia coli | 25% id, 40% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 293820-294350 (frame +3) on 139 is similar to: | PaperBLAST |
thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris | 32% id, 92% cov |
Lawrence Berkeley National Laboratory