Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 22 curated entries in PaperBLAST's database that match '2.7.1.59' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO3507: conserved hypothetical protein (NCBI ptt file)
is similar to:
PaperBLAST

SO3507: N-acetylglucosamine kinase (EC 2.7.1.59) from Shewanella oneidensis

100% id,
100% cov

Shewana3_3114: N-acetylglucosamine kinase (EC 2.7.1.59) from Shewanella sp.

93% id,
99% cov

Sama_0944: N-acetylglucosamine kinase (EC 2.7.1.59) from Shewanella amazonensis

72% id,
100% cov

More...

SO1656: ROK family protein (NCBI ptt file)
is similar to:
PaperBLAST

NAGK_ECOLI / P75959: N-acetyl-D-glucosamine kinase; GlcNAc kinase; EC 2.7.1.59 from Escherichia coli
YcfX / b1119: N-acetyl-D-glucosamine kinase (EC 2.7.1.59) from Escherichia coli
nagK / GB|ABB62126.1: N-acetyl-D-glucosamine kinase; EC 2.7.1.59 from Escherichia coli
nagK / P75959: N-acetyl-D-glucosamine kinase (EC 2.7.1.59) from Escherichia coli

41% id,
98% cov

NAGK_SALTY / Q8ZPZ9: N-acetyl-D-glucosamine kinase; GlcNAc kinase; EC 2.7.1.59 from Salmonella typhimurium

40% id,
98% cov

AGAK_SHESA / A0KYQ6: N-acetylgalactosamine kinase AgaK; GalNAc kinase; N-acetylglucosamine kinase; GlcNAc kinase; EC 2.7.1.-; EC 2.7.1.59 from Shewanella sp.

36% id,
95% cov

More...

SO1389: ROK family protein (NCBI ptt file)
is similar to:
PaperBLAST

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

24% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory