Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 20 curated entries in PaperBLAST's database that match '2.7.2.11' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO1121: glutamate 5-kinase (NCBI ptt file)
is similar to:
PaperBLAST

PROB_ECOLI / P0A7B5: Glutamate 5-kinase; Gamma-glutamyl kinase; GK; EC 2.7.2.11 from Escherichia coli
ProB / b0242: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli
proB: glutamate 5-kinase; EC 2.7.2.11 from Escherichia coli
proB / P0A7B5: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli
P0A7B5: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli

63% id,
99% cov

Ga0059261_3512: glutamate 5-kinase (EC 2.7.2.11) from Sphingomonas koreensis

40% id,
97% cov

Q6E235: glutamate 5-kinase (EC 2.7.2.11) from Bacillus subtilis

39% id,
97% cov

More...

SO1122: gamma-glutamyl phosphate reductase (NCBI ptt file)
is similar to:
PaperBLAST

P5CS1 / P54887: δ1-pyrroline-5-carboxylate synthetase (EC 1.2.1.41; EC 2.7.2.11) from Arabidopsis thaliana

37% id,
55% cov

P5CS1_ORYSJ / O04226: Delta-1-pyrroline-5-carboxylate synthase 1; OsP5CS1; EC 2.7.2.11; EC 1.2.1.41 from Oryza sativa

36% id,
56% cov

P5CS2_ORYSJ / Q941T1: Delta-1-pyrroline-5-carboxylate synthase 2; OsP5CS2; EC 2.7.2.11; EC 1.2.1.41 from Oryza sativa

35% id,
55% cov

More...

SO4055: aspartokinase II/homoserine dehydrogenase, methionine-sensitive (NCBI ptt file)
is similar to:
PaperBLAST

Q6E235: glutamate 5-kinase (EC 2.7.2.11) from Bacillus subtilis

29% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory